6ify

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Current revision (10:33, 27 March 2024) (edit) (undo)
 
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<SX load='6ify' size='340' side='right' viewer='molstar' caption='[[6ify]], [[Resolution|resolution]] 3.80&Aring;' scene=''>
<SX load='6ify' size='340' side='right' viewer='molstar' caption='[[6ify]], [[Resolution|resolution]] 3.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6ify]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_19258 Atcc 19258] and [http://en.wikipedia.org/wiki/Strtn Strtn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IFY OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6IFY FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6ify]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_thermophilus Streptococcus thermophilus] and [https://en.wikipedia.org/wiki/Streptococcus_thermophilus_ND03 Streptococcus thermophilus ND03]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IFY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6IFY FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.8&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">csm2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=767463 STRTN]), csm3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=767463 STRTN]), csm4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1308 ATCC 19258]), csm5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=767463 STRTN])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6ify FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ify OCA], [http://pdbe.org/6ify PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ify RCSB], [http://www.ebi.ac.uk/pdbsum/6ify PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ify ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ify FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ify OCA], [https://pdbe.org/6ify PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ify RCSB], [https://www.ebi.ac.uk/pdbsum/6ify PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ify ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Csm, a type III-A CRISPR-Cas interference complex, is a CRISPR RNA (crRNA)-guided RNase that also possesses target RNA-dependent DNase and cyclic oligoadenylate (cOA) synthetase activities. However, the structural features allowing target RNA-binding-dependent activation of DNA cleavage and cOA generation remain unknown. Here, we report the structure of Csm in complex with crRNA together with structures of cognate or non-cognate target RNA bound Csm complexes. We show that depending on complementarity with the 5' tag of crRNA, the 3' anti-tag region of target RNA binds at two distinct sites of the Csm complex. Importantly, the interaction between the non-complementary anti-tag region of cognate target RNA and Csm1 induces a conformational change at the Csm1 subunit that allosterically activates DNA cleavage and cOA generation. Together, our structural studies provide crucial insights into the mechanistic processes required for crRNA-meditated sequence-specific RNA cleavage, RNA target-dependent non-specific DNA cleavage, and cOA generation.
 
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Structure Studies of the CRISPR-Csm Complex Reveal Mechanism of Co-transcriptional Interference.,You L, Ma J, Wang J, Artamonova D, Wang M, Liu L, Xiang H, Severinov K, Zhang X, Wang Y Cell. 2018 Nov 26. pii: S0092-8674(18)31451-X. doi: 10.1016/j.cell.2018.10.052. PMID:30503210<ref>PMID:30503210</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 6ify" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</SX>
</SX>
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[[Category: Atcc 19258]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Strtn]]
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[[Category: Streptococcus thermophilus]]
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[[Category: Ma, J]]
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[[Category: Streptococcus thermophilus ND03]]
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[[Category: Wang, J]]
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[[Category: Ma J]]
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[[Category: Wang, Y]]
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[[Category: Wang J]]
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[[Category: You, L]]
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[[Category: Wang Y]]
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[[Category: Zhang, X]]
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[[Category: You L]]
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[[Category: Crispr-cas system]]
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[[Category: Zhang X]]
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[[Category: Csm complex]]
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[[Category: Rna binding protein]]
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[[Category: Type iii-a]]
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Current revision

Type III-A Csm complex, Cryo-EM structure of Csm-CTR1

6ify, resolution 3.80Å

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