6ipv

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Current revision (10:34, 27 March 2024) (edit) (undo)
 
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<StructureSection load='6ipv' size='340' side='right'caption='[[6ipv]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
<StructureSection load='6ipv' size='340' side='right'caption='[[6ipv]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6ipv]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IPV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IPV FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6ipv]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_exfoliatus Streptomyces exfoliatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IPV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6IPV FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ipv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ipv OCA], [http://pdbe.org/6ipv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ipv RCSB], [http://www.ebi.ac.uk/pdbsum/6ipv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ipv ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ipv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ipv OCA], [https://pdbe.org/6ipv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ipv RCSB], [https://www.ebi.ac.uk/pdbsum/6ipv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ipv ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/A0A5A4PV77_STREX A0A5A4PV77_STREX]
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Carquinostatin A (CQS), a potent neuroprotective substance, is a unique carbazole alkaloid with both an ortho-quinone function and an isoprenoid moiety. We identified the entire gene cluster responsible for CQS biosynthesis in Streptomyces exfoliatus through heterologous production of CQS and gene deletion. Biochemical characterization of seven CQS biosynthetic gene products (CqsB1-7) established the total biosynthetic pathway of CQS. Reconstitution of CqsB1 and CqsB2 showed that the synthesis of the carbazole skeleton involves CqsB1-catalyzed decarboxylative condensation of an alpha-hydroxyl-beta-keto acid intermediate with 3-hydroxybutyryl-ACP followed by CqsB2-catalyzed oxidative cyclization. Based on crystal structures and mutagenesis-based biochemical assays, a detailed mechanism for the unique deprotonation-initiated cyclization catalyzed by CqsB2 is proposed. Finally, analysis of the substrate specificity of the biosynthetic enzymes led to the production of novel carbazoles.
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An Unprecedented Cyclization Mechanism in the Biosynthesis of Carbazole Alkaloids in Streptomyces.,Kobayashi M, Tomita T, Shin-Ya K, Nishiyama M, Kuzuyama T Angew Chem Int Ed Engl. 2019 Sep 16;58(38):13349-13353. doi:, 10.1002/anie.201906864. Epub 2019 Aug 13. PMID:31350791<ref>PMID:31350791</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6ipv" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Kobayashi, M]]
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[[Category: Streptomyces exfoliatus]]
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[[Category: Kuzuyama, T]]
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[[Category: Kobayashi M]]
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[[Category: Nishiyama, M]]
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[[Category: Kuzuyama T]]
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[[Category: Tomita, T]]
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[[Category: Nishiyama M]]
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[[Category: Biosynthetic protein]]
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[[Category: Tomita T]]
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[[Category: Carquinostatin a biosynthesis]]
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[[Category: Polyketide aromatase/cyclase]]
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Current revision

Crystal structure of CqsB2 from Streptomyces exfoliatus 2419-SVT2 (apo form)

PDB ID 6ipv

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