6lb9

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Current revision (10:46, 27 March 2024) (edit) (undo)
 
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<StructureSection load='6lb9' size='340' side='right'caption='[[6lb9]], [[Resolution|resolution]] 2.23&Aring;' scene=''>
<StructureSection load='6lb9' size='340' side='right'caption='[[6lb9]], [[Resolution|resolution]] 2.23&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6lb9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LB9 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6LB9 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6lb9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_clavuligerus Streptomyces clavuligerus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LB9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LB9 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.227&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6lb9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lb9 OCA], [http://pdbe.org/6lb9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6lb9 RCSB], [http://www.ebi.ac.uk/pdbsum/6lb9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6lb9 ProSAT]</span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6lb9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lb9 OCA], [https://pdbe.org/6lb9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6lb9 RCSB], [https://www.ebi.ac.uk/pdbsum/6lb9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6lb9 ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/B5GPM3_STRCL B5GPM3_STRCL]
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Bacteria have evolved diverse mechanisms to fend off predation by bacteriophages. We previously identified the Dnd system, which uses DndABCDE to insert sulfur into the DNA backbone as a double-stranded phosphorothioate (PT) modification, and DndFGH, a restriction component. Here, we describe an unusual SspABCD-SspE PT system in Vibrio cyclitrophicus, Escherichia coli and Streptomyces yokosukanensis, which has distinct genetic organization, biochemical functions and phenotypic behaviour. SspABCD confers single-stranded and high-frequency PTs with SspB acting as a nickase and possibly introducing nicks to facilitate sulfur incorporation. Strikingly, SspABCD coupled with SspE provides protection against phages in unusual ways: (1) SspE senses sequence-specific PTs by virtue of its PT-stimulated NTPase activity to exert its anti-phage activity, and (2) SspE inhibits phage propagation by introducing nicking damage to impair phage DNA replication. These results not only expand our knowledge about the diversity and functions of DNA PT modification but also enhance our understanding of the known arsenal of defence systems.
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SspABCD-SspE is a phosphorothioation-sensing bacterial defence system with broad anti-phage activities.,Xiong X, Wu G, Wei Y, Liu L, Zhang Y, Su R, Jiang X, Li M, Gao H, Tian X, Zhang Y, Hu L, Chen S, Tang Y, Jiang S, Huang R, Li Z, Wang Y, Deng Z, Wang J, Dedon PC, Chen S, Wang L Nat Microbiol. 2020 Apr 6. pii: 10.1038/s41564-020-0700-6. doi:, 10.1038/s41564-020-0700-6. PMID:32251370<ref>PMID:32251370</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6lb9" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Liqiong, L]]
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[[Category: Streptomyces clavuligerus]]
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[[Category: Yubing, Z]]
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[[Category: Liqiong L]]
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[[Category: Dnase]]
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[[Category: Yubing Z]]
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[[Category: Hydrolase]]
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[[Category: Pt]]
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Current revision

Magnesium ion-bound SspB crystal structure

PDB ID 6lb9

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