7cgy

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Current revision (10:51, 27 March 2024) (edit) (undo)
 
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<StructureSection load='7cgy' size='340' side='right'caption='[[7cgy]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
<StructureSection load='7cgy' size='340' side='right'caption='[[7cgy]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[7cgy]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7CGY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7CGY FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7cgy]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7CGY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7CGY FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DMC1, DMC1H, LIM15 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7cgy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cgy OCA], [https://pdbe.org/7cgy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7cgy RCSB], [https://www.ebi.ac.uk/pdbsum/7cgy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7cgy ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7cgy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cgy OCA], [https://pdbe.org/7cgy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7cgy RCSB], [https://www.ebi.ac.uk/pdbsum/7cgy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7cgy ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/DMC1_HUMAN DMC1_HUMAN]] May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks (By similarity).
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[https://www.uniprot.org/uniprot/DMC1_HUMAN DMC1_HUMAN] May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks (By similarity).
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Both high-fidelity and mismatch-tolerant recombination, catalyzed by RAD51 and DMC1 recombinases, respectively, are indispensable for genomic integrity. Here, we use cryo-EM, MD simulation and functional analysis to elucidate the structural basis for the mismatch tolerance of DMC1. Structural analysis of DMC1 presynaptic and postsynaptic complexes suggested that the lineage-specific Loop 1 Gln244 (Met243 in RAD51) may help stabilize DNA backbone, whereas Loop 2 Pro274 and Gly275 (Val273/Asp274 in RAD51) may provide an open "triplet gate" for mismatch tolerance. In support, DMC1-Q244M displayed marked increase in DNA dynamics, leading to unobservable DNA map. MD simulation showed highly dispersive mismatched DNA ensemble in RAD51 but well-converged DNA in DMC1 and RAD51-V273P/D274G. Replacing Loop 1 or Loop 2 residues in DMC1 with RAD51 counterparts enhanced DMC1 fidelity, while reciprocal mutations in RAD51 attenuated its fidelity. Our results show that three Loop 1/Loop 2 residues jointly enact contrasting fidelities of DNA recombinases.
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Identification of fidelity-governing factors in human recombinases DMC1 and RAD51 from cryo-EM structures.,Luo SC, Yeh HY, Lan WH, Wu YM, Yang CH, Chang HY, Su GC, Lee CY, Wu WJ, Li HW, Ho MC, Chi P, Tsai MD Nat Commun. 2021 Jan 14;12(1):115. doi: 10.1038/s41467-020-20258-1. PMID:33446654<ref>PMID:33446654</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 7cgy" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Human]]
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[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Chi, H Y]]
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[[Category: Chi HY]]
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[[Category: Ho, M C]]
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[[Category: Ho MC]]
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[[Category: Luo, S C]]
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[[Category: Luo SC]]
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[[Category: Tsai, M D]]
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[[Category: Tsai MD]]
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[[Category: Yeh, H Y]]
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[[Category: Yeh HY]]
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[[Category: Atpase]]
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[[Category: Dna repair]]
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[[Category: Meiotic homologous recombination]]
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[[Category: Recombination]]
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Current revision

Human DMC1 Q244M mutant of the post-synaptic complexes

PDB ID 7cgy

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Proteopedia Page Contributors and Editors (what is this?)

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