This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Virus protease 3D structures
From Proteopedia
(Difference between revisions)
| Line 146: | Line 146: | ||
**[[3sj9]] – CSVP 3C (mutant) + peptide inhibitor <br /> | **[[3sj9]] – CSVP 3C (mutant) + peptide inhibitor <br /> | ||
| - | *'''Human poliovirus protease''' | + | *'''Human poliovirus 3C protease''' |
**[[1l1n]] – HPV <br /> | **[[1l1n]] – HPV <br /> | ||
**[[2ijd]] – HPV (mutant) <br /> | **[[2ijd]] – HPV (mutant) <br /> | ||
| + | **[[4dcd]] – HPV + peptide inhibitor <br /> | ||
*'''Human rhinovirus protease''' | *'''Human rhinovirus protease''' | ||
| Line 161: | Line 162: | ||
**[[5x45]] – HRVP 2A – human rhinovirus C15 <br /> | **[[5x45]] – HRVP 2A – human rhinovirus C15 <br /> | ||
| - | *'''Human enterovirus protease''' | + | *'''Human enterovirus protease A71''' |
| - | **[[3osy]], [[4ghq]] – HEVP | + | **[[3osy]], [[4ghq]], [[8cny]] – HEVP <br /> |
**[[3r0f]] – HEVP (mutant) <br /> | **[[3r0f]] – HEVP (mutant) <br /> | ||
**[[3sjk]] – HEVP (mutant) + peptide inhibitor <br /> | **[[3sjk]] – HEVP (mutant) + peptide inhibitor <br /> | ||
| - | **[[4ght]], [[5bpe]], [[5c1u]], [[5c1x]], [[5c1y]], [[5c20]], [[5dp3]], [[5dp4]], [[5dp5]], [[5dp6]], [[5dp7]], [[5dp8]], [[5dp9]], [[5dpa]], [[5gsw]], [[5hxf]], [[5wq2]], [[6lka]] – HEVP + inhibitor <br /> | + | **[[4ght]], [[5bpe]], [[5c1u]], [[5c1x]], [[5c1y]], [[5c20]], [[5dp3]], [[5dp4]], [[5dp5]], [[5dp6]], [[5dp7]], [[5dp8]], [[5dp9]], [[5dpa]], [[5gso]], [[5gsw]], [[5hxf]], [[5wq2]], [[6lka]], [[7dnc]] – HEVP + inhibitor <br /> |
**[[3sjo]], [[5hxf]], [[5wq2]] – HEVP + drug <br /> | **[[3sjo]], [[5hxf]], [[5wq2]] – HEVP + drug <br /> | ||
**[[3qzq]], [[3qzr]], [[3r0f]] – HEVP (mutant) + drug <br /> | **[[3qzq]], [[3qzr]], [[3r0f]] – HEVP (mutant) + drug <br /> | ||
| - | **[[3q3x]] – HEVP (mutant) | + | |
| + | *'''Human enterovirus protease B''' | ||
| + | |||
| + | **[[3q3x]] – HEVP (mutant) <br /> | ||
**[[3q3y]] – HEVP (mutant) + inhibitor <br /> | **[[3q3y]] – HEVP (mutant) + inhibitor <br /> | ||
**[[3ruo]] – HEVP + drug <br /> | **[[3ruo]] – HEVP + drug <br /> | ||
| - | **[[3zv8]] – HEVP residues 1549-1731 | + | |
| - | **[[3zv9]], [[3zva]], [[3zvb]], [[3zvc]], [[3zvd]], [[3zve]], [[3zvf]], [[3zvg]] – HEVP + inhibitor <br /> | + | *'''Human enterovirus protease D68''' |
| + | |||
| + | **[[3zv8]], [[8cnx]] – HEVP residues 1549-1731 <br /> | ||
| + | **[[8fl5]] – HEVP (mutant) <br /> | ||
| + | **[[3zv9]], [[3zva]], [[3zvb]], [[3zvc]], [[3zvd]], [[3zve]], [[3zvf]], [[3zvg]], [[7gnv]], [[7gnw]], [[7gnx]], [[7gny]], [[7gnz]], [[7go0]], [[7go1]], [[7go2]], [[7go3]], [[7go4]], [[7go5]], [[7go6]], [[7go7]], [[7go8]], [[7go9]], [[7goa]], [[7gob]], [[7goc]], [[7god]], [[7goe]], [[7gof]], [[7gog]], [[7goh]], [[7goi]], [[7goj]], [[7gok]], [[7gol]], [[7gom]], [[7gon]], [[7goo]], [[7gop]], [[7goq]], [[7gor]], [[7got]], [[7gou]], [[7gov]], [[7gow]], [[7gox]], [[7goy]], [[7goz]], [[7gp0]], [[7gp1]], [[7gp2]], [[7gp3]], [[7gp4]], [[7gp5]], [[7gp6]], [[7gp7]], [[7gp8]], [[7gp9]], [[7gpa]], [[7gpc]], [[7gpd]], [[7gpe]], [[7gpf]], [[7gpg]], [[7gph]], [[7gpi]], [[7gpj]], [[7gpl]], [[7gpm]], [[7gpn]], [[7gpo]], [[7gpp]], [[7gpq]], [[7gpr]], [[7gps]], [[7gpt]], [[7gpu]], [[7gpv]], [[7gpw]], [[7gpx]], [[7gpy]], [[7gpz]], [[7gq0]], [[7gq1]], [[7gq2]], [[7gq3]], [[7gq4]], [[7gq6]], [[7gq7]], [[7gq8]], [[7gq9]], [[7gqa]], [[7gqb]], [[7gqc]], [[7gqd]], [[7gqe]], [[7gqf]], [[7gqh]], [[7gqi]], [[7gqj]], [[7gqk]], [[7gql]], [[7gqm]], [[7gqn]], [[7gqo]], [[7gqp]], [[7gqq]], [[7gqr]] – HEVP + inhibitor <br /> | ||
| + | **[[7l8h]] – HEVP + drug <br /> | ||
*'''Porcine epidemic diarrhea virus protease''' | *'''Porcine epidemic diarrhea virus protease''' | ||
| Line 204: | Line 213: | ||
**[[6ljb]], [[6lj9]] – ASFV – African swine fever virus<br /> | **[[6ljb]], [[6lj9]] – ASFV – African swine fever virus<br /> | ||
| + | |||
| + | *'''Senecavirus 3C protease residues 1509-1719''' | ||
| + | |||
| + | **[[6l0t]] – 3CP<br /> | ||
| + | |||
| + | *'''Norovirus 3C-like protease residues 1-173''' | ||
| + | |||
| + | **[[1wqs]] – 3CLP<br /> | ||
*'''Norovirus 3C-like protease residues 1101-1281''' | *'''Norovirus 3C-like protease residues 1101-1281''' | ||
| Line 221: | Line 238: | ||
*'''SARS human corona virus 3C-like protease C-terminal 3241-3546''' | *'''SARS human corona virus 3C-like protease C-terminal 3241-3546''' | ||
| - | **[[1q2w]], [[1uj1]], [[1uk2]], [[1uk3]], [[1z1i]], [[2a5a]], [[2bx3]], [[2c3s]], [[2bx3]], [[2bx4]], [[2duc]], [[2gt7]], [[5r8t]], [[6m2q]], [[6wqf]], [[6xb0]], [[6xb1]], [[6xb2]], [[6xhu]], [[6y2e]], [[7ar5]], [[7ar6]],[[7bro]], [[7jp1]], [[7jpy]], [[7jun]], [[7k3t]], [[7kfi]], [[7lfp]], [[7khp]] – 3CLP – SARS-COV<br /> | + | **[[1q2w]], [[1uj1]], [[1uk2]], [[1uk3]], [[1z1i]], [[2a5a]], [[2bx3]], [[2c3s]], [[2bx3]], [[2bx4]], [[2duc]], [[2gt7]], [[3ebn]], [[3vb3]], [[5r8t]], [[6m2q]], [[6wqf]], [[6xb0]], [[6xb1]], [[6xb2]], [[6xhu]], [[6y2e]], [[7ar5]], [[7ar6]], [[7bro]], [[7dqz]], [[7jp1]], [[7jpy]], [[7jun]], [[7k3t]], [[7kfi]], [[7lfp]], [[7khp]] – 3CLP – SARS-COV<br /> |
| - | **[[1z1j]], [[2gt8]], [[2pwx]], [[2q6g]], [[2qc2]], [[2qcy]], [[3m3s]], [[3m3t]], [[3m3v]], [[3fzd]], [[3f9e]], [[3f9f]], [[3f9g]], [[3f9h]], [[3ea7]], [[3ea8]], [[3ea9]], [[3eaj]], [[3e91]], [[3ee7]], [[3aw1]], [[4hi3]], [[5b6o]], [[7joy]], [[ | + | **[[1z1j]], [[2gt8]], [[2pwx]], [[2q6g]], [[2qc2]], [[2qcy]], [[3m3s]], [[3m3t]], [[3m3v]], [[3fzd]], [[3f9e]], [[3f9f]], [[3f9g]], [[3f9h]], [[3ea7]], [[3ea8]], [[3ea9]], [[3eaj]], [[3e91]], [[3ee7]], [[3aw1]], [[4hi3]], [[5b6o]], [[7joy]], [[7kvg]], [[7t2v]] – 3CLP (mutant) – SARS-COV<br /> |
**[[2liz]] – 3CLP – SARS-COV - NMR<br /> | **[[2liz]] – 3CLP – SARS-COV - NMR<br /> | ||
| - | **[[3ebn]] – 3CLP C-terminal 3429-3546<br /> | ||
**[[6wtj]], [[6wtk]], [[6wtm]], [[6xqs]], [[6xqt]], [[6xqu]], [[7aol]], [[7b83]], [[7brp]], [[7buy]], [[7c6s]], [[7jyc]], [[7k6d]], [[7k6e]] – 3CLP + drug – hCOV-2<br /> | **[[6wtj]], [[6wtk]], [[6wtm]], [[6xqs]], [[6xqt]], [[6xqu]], [[7aol]], [[7b83]], [[7brp]], [[7buy]], [[7c6s]], [[7jyc]], [[7k6d]], [[7k6e]] – 3CLP + drug – hCOV-2<br /> | ||
**[[3d23]] – 3CLP + inhibitor – hCOV-HKU1<br /> | **[[3d23]] – 3CLP + inhibitor – hCOV-HKU1<br /> | ||
| - | **[[ | + | **[[3tlo]], [[7e6l]], [[7e6m]], [[7e6n]], [[7e6r]] – NL633CLP 2940-3242 – hCOV-NL63<br /> |
| - | **[[1wof]], [[2amd]], [[2amq]], [[2amp]], [[2gx4]], [[2gz7]], [[2gz8]], [[2op9]], [[2ops]], [[2vj1]], [[2ynb]], [[3atw]], [[3avz]], [[3d62]], [[3iwm]], [[3sn8]], [[3v3m]], [[4tww]], [[4twy]], [[4wy3]], [[5re4]], [[5re5]], [[5re6]], [[5re7]], [[5re8]], [[5re9]], [[5rea]], [[5reb]], [[5rec]], [[5red]], [[5ree]], [[5ref]], [[5reg]], [[5rep]], [[5rer]], [[5res]], [[5ret]], [[5reu]], [[5rew]], [[5rex]], [[5rey]], [[5rez]], [[5rf1]], [[5rf2]], [[5rf3]], [[5rf4]], [[5rf5]], [[5rf6]], [[5rf9]], [[5rfa]], [[5rfb]], [[5rfc]], [[5rfd]], [[5rfe]], [[5rff]], [[5rfg]], [[5rfh]], [[5rg1]], [[5rg2]], [[5rg3]], [[5rgg]], [[5rgh]], [[5rgi]], [[5rgj]], [[5rgk]], [[5rgl]], [[5rgm]], [[5rgn]], [[5rgo]], [[5rgp]], [[5rgq]], [[5rgr]], [[5rgs]], [[6lu7]], [[6lze]], [[6m0k]], [[6m2n]], [[6w2a]], [[6w63]], [[6w79]], [[6wco]], [[6xhl]], [[6xhm]], [[6xhn]], [[6xho]], [[6xmk]], [[7a1u]], [[7aga]], [[7aha]], [[7amj]],[7bqy]], [[7c6u]], [[7d1m]], [[7jkv]], [[7jpz]], [[7jq0]], [[7jq1]], [[7jq2]], [[7jq3]], [[7jq4]], [[7jq5]], [[7k0e]], [[7k0f]], [[7k0g]], [[7k0h]], [[7ldx]] – 3CLP + inhibitor – SARS-COV<br /> | + | **[[5gwy]], [[7eov]] – NL633CLP + inhibitor <br /> |
| - | **[[5c5n]], [[5c5o]] – 3CLP (mutant) + inhibitor – SARS-COV<br /> | + | **[[1wof]], [[2amd]], [[2amq]], [[2amp]], [[2gx4]], [[2gz7]], [[2gz8]], [[2op9]], [[2ops]], [[2vj1]], [[2ynb]], [[2z94]], [[3atw]], [[3avz]], [[3d62]], [[3iwm]], [[3sn8]], [[3v3m]], [[4tww]], [[4twy]], [[4wy3]], [[5re4]], [[5re5]], [[5re6]], [[5re7]], [[5re8]], [[5re9]], [[5rea]], [[5reb]], [[5rec]], [[5red]], [[5ree]], [[5ref]], [[5reg]], [[5rep]], [[5rer]], [[5res]], [[5ret]], [[5reu]], [[5rew]], [[5rex]], [[5rey]], [[5rez]], [[5rf1]], [[5rf2]], [[5rf3]], [[5rf4]], [[5rf5]], [[5rf6]], [[5rf9]], [[5rfa]], [[5rfb]], [[5rfc]], [[5rfd]], [[5rfe]], [[5rff]], [[5rfg]], [[5rfh]], [[5rg1]], [[5rg2]], [[5rg3]], [[5rgg]], [[5rgh]], [[5rgi]], [[5rgj]], [[5rgk]], [[5rgl]], [[5rgm]], [[5rgn]], [[5rgo]], [[5rgp]], [[5rgq]], [[5rgr]], [[5rgs]], [[6lnq]], [[6lny]], [[6lo0]], [[6lu7]], [[6lze]], [[6m0k]], [[6m2n]], [[6w2a]], [[6w63]], [[6w79]], [[6wco]], [[6xhl]], [[6xhm]], [[6xhn]], [[6xho]], [[6xmk]], [[7a1u]], [[7aga]], [[7aha]], [[7amj]], [[7bqy]], [[7c6u]], [[7d1m]], [[7jkv]], [[7jpz]], [[7jq0]], [[7jq1]], [[7jq2]], [[7jq3]], [[7jq4]], [[7jq5]], [[7k0e]], [[7k0f]], [[7k0g]], [[7k0h]], [[7ldx]], [[7vic]], [[7xar]], [[8uld]] – 3CLP + inhibitor – SARS-COV<br /> |
| + | **[[5c5n]], [[5c5o]], [[8h6i]] – 3CLP (mutant) + inhibitor – SARS-COV<br /> | ||
**[[2vj1]], [[3tit]], [[3tiu]] – 3CLP + unsaturated ester<br /> | **[[2vj1]], [[3tit]], [[3tiu]] – 3CLP + unsaturated ester<br /> | ||
| - | **[[2zu2]], [[2zu4]], [[2zu5]], [[3tns]], [[3tnt]], [[ | + | **[[2zu2]], [[2zu4]], [[2zu5]], [[3aw0]], [[3tns]], [[3tnt]], [[3vb4]], [[3vb5]], [[3vb6]], [[3vb7]], [[7t2u]] – 3CLP + peptidomimetic compound<br /> |
**[[2z9g]] – 3CLP + benzene + Hg<br /> | **[[2z9g]] – 3CLP + benzene + Hg<br /> | ||
**[[2z9j]], [[2z9k]], [[2z9l]] – 3CLP + Zn compound<br /> | **[[2z9j]], [[2z9k]], [[2z9l]] – 3CLP + Zn compound<br /> | ||
| Line 258: | Line 275: | ||
**[[5c3n]], [[5ko3]] – ORF1A<br /> | **[[5c3n]], [[5ko3]] – ORF1A<br /> | ||
| - | **[[4wmd]], [[4wme]], [[4wmf]] – ORF1A (mutant)<br /> | + | **[[4wmd]], [[4wme]], [[4wmf]], [[8e7t]] – ORF1A (mutant)<br /> |
**[[4ylu]], [[5wkj]], [[5wkk]], [[5wkl]], [[5wkm]], [[6vgy]], [[6vgz]], [[6vh0]], [[6vh1]], [[6vh2]], [[6vh3]] – ORF1A + inhibitor<br /> | **[[4ylu]], [[5wkj]], [[5wkk]], [[5wkl]], [[5wkm]], [[6vgy]], [[6vgz]], [[6vh0]], [[6vh1]], [[6vh2]], [[6vh3]] – ORF1A + inhibitor<br /> | ||
| - | **[[4rsp]] – ORF1A + peptide inhibitor<br /> | + | **[[4rsp]], [[7d3c]] – ORF1A + peptide inhibitor<br /> |
**[[5zu7]], [[5zu9]], [[5zua]] – ORF1A + nucleotide<br /> | **[[5zu7]], [[5zu9]], [[5zua]] – ORF1A + nucleotide<br /> | ||
**[[5zub]] – ORF1A + NAD<br /> | **[[5zub]] – ORF1A + NAD<br /> | ||
Revision as of 08:33, 2 April 2024
Updated on 02-April-2024 - For a general description of the protein see Virus protease
