2fjt

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Current revision (06:25, 3 April 2024) (edit) (undo)
 
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<StructureSection load='2fjt' size='340' side='right'caption='[[2fjt]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='2fjt' size='340' side='right'caption='[[2fjt]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2fjt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis_kim Yersinia pestis kim]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FJT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FJT FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2fjt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis_KIM10+ Yersinia pestis KIM10+]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FJT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FJT FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.901&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSX:S-OXY+CYSTEINE'>CSX</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSX:S-OXY+CYSTEINE'>CSX</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Adenylate_cyclase Adenylate cyclase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.6.1.1 4.6.1.1] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fjt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fjt OCA], [https://pdbe.org/2fjt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fjt RCSB], [https://www.ebi.ac.uk/pdbsum/2fjt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fjt ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fjt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fjt OCA], [https://pdbe.org/2fjt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fjt RCSB], [https://www.ebi.ac.uk/pdbsum/2fjt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fjt ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0A5P8YEL9_YERPE A0A5P8YEL9_YERPE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fjt ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fjt ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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The crystal structure of the class IV adenylyl cyclase (AC) from Yersinia pestis (Yp) is reported at 1.9 A resolution. The class IV AC fold is distinct from the previously described folds for class II and class III ACs. The dimeric AC-IV folds into an antiparallel eight-stranded barrel whose connectivity has been seen in only three previous structures: yeast RNA triphosphatase and two proteins of unknown function from Pyrococcus furiosus and Vibrio parahaemolyticus. Eight highly conserved ionic residues E10, E12, K14, R63, K76, K111, D126, and E136 lie in the barrel core and form the likely binding sites for substrate and divalent cations. A phosphate ion is observed bound to R63, K76, K111, and R113 near the center of the conserved cluster. Unlike the AC-II and AC-III active sites that utilize two-Asp motifs for cation binding, the AC-IV active site is relatively enriched in glutamate and features an ExE motif as its most conserved element. Homologs of Y. pestis AC-IV, including human thiamine triphosphatase, span the three kingdoms of life and delineate an ancient family of phosphonucleotide processing enzymes.
 
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Structure of the class IV adenylyl cyclase reveals a novel fold.,Gallagher DT, Smith NN, Kim SK, Heroux A, Robinson H, Reddy PT J Mol Biol. 2006 Sep 8;362(1):114-22. Epub 2006 Aug 14. PMID:16905149<ref>PMID:16905149</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 2fjt" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[3D Adenylyl cyclase 3D structures|3D Adenylyl cyclase 3D structures]]
*[[3D Adenylyl cyclase 3D structures|3D Adenylyl cyclase 3D structures]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Adenylate cyclase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Yersinia pestis kim]]
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[[Category: Yersinia pestis KIM10+]]
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[[Category: Gallagher, D T]]
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[[Category: Gallagher DT]]
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[[Category: Heroux, A]]
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[[Category: Heroux A]]
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[[Category: Kim, S K]]
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[[Category: Kim S-K]]
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[[Category: Reddy, P T]]
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[[Category: Reddy PT]]
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[[Category: Robinson, H]]
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[[Category: Robinson H]]
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[[Category: Smith, N N]]
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[[Category: Smith NN]]
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[[Category: Beta barrel]]
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[[Category: Cyclase]]
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[[Category: Dimer]]
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[[Category: Lyase]]
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Current revision

Adenylyl cyclase class iv from Yersinia pestis

PDB ID 2fjt

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