1rgo

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[[Image:1rgo.gif|left|200px]]
[[Image:1rgo.gif|left|200px]]
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{{Structure
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|PDB= 1rgo |SIZE=350|CAPTION= <scene name='initialview01'>1rgo</scene>
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The line below this paragraph, containing "STRUCTURE_1rgo", creates the "Structure Box" on the page.
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|LIGAND= <scene name='pdbligand=A:ADENOSINE-5&#39;-MONOPHOSPHATE'>A</scene>, <scene name='pdbligand=U:URIDINE-5&#39;-MONOPHOSPHATE'>U</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
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|GENE= ZFP36L2, BRF2, TIS11D, ERF2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
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|DOMAIN=
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{{STRUCTURE_1rgo| PDB=1rgo | SCENE= }}
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rgo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rgo OCA], [http://www.ebi.ac.uk/pdbsum/1rgo PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1rgo RCSB]</span>
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'''Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d'''
'''Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d'''
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[[Category: Martinez-Yamout, M A.]]
[[Category: Martinez-Yamout, M A.]]
[[Category: Wright, P E.]]
[[Category: Wright, P E.]]
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[[Category: tis11 ttp tristetraprolin butyrate response factor erf nup475 zfp zn zinc finger rna ss single-stranded are utr tandem intercalation intercalate specific]]
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[[Category: Tis11 ttp tristetraprolin butyrate response factor erf nup475 zfp zn zinc finger rna ss single-stranded are utr tandem intercalation intercalate specific]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 07:28:24 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:27:55 2008''
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Revision as of 04:28, 3 May 2008

Image:1rgo.gif

Template:STRUCTURE 1rgo

Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d


Overview

The tandem zinc finger (TZF) domain of the protein TIS11d binds to the class II AU-rich element (ARE) in the 3' untranslated region (3' UTR) of target mRNAs and promotes their deadenylation and degradation. The NMR structure of the TIS11d TZF domain bound to the RNA sequence 5'-UUAUUUAUU-3' comprises a pair of novel CCCH fingers of type CX(8)CX(5)CX(3)H separated by an 18-residue linker. The two TIS11d zinc fingers bind in a symmetrical fashion to adjacent 5'-UAUU-3' subsites on the single-stranded RNA via a combination of electrostatic and hydrogen-bonding interactions, with intercalative stacking between conserved aromatic side chains and the RNA bases. Sequence specificity in RNA recognition is achieved by a network of intermolecular hydrogen bonds, mostly between TIS11d main-chain functional groups and the Watson-Crick edges of the bases. The TIS11d structure provides insights into the RNA-binding functions of this large family of CCCH zinc finger proteins.

About this Structure

1RGO is a Single protein structure of sequence from Homo sapiens. Full crystallographic information is available from OCA.

Reference

Recognition of the mRNA AU-rich element by the zinc finger domain of TIS11d., Hudson BP, Martinez-Yamout MA, Dyson HJ, Wright PE, Nat Struct Mol Biol. 2004 Mar;11(3):257-64. Epub 2004 Feb 8. PMID:14981510 Page seeded by OCA on Sat May 3 07:28:24 2008

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