8ek4

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Current revision (07:26, 3 April 2024) (edit) (undo)
 
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8ek4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8ek4 OCA], [https://pdbe.org/8ek4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8ek4 RCSB], [https://www.ebi.ac.uk/pdbsum/8ek4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8ek4 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8ek4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8ek4 OCA], [https://pdbe.org/8ek4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8ek4 RCSB], [https://www.ebi.ac.uk/pdbsum/8ek4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8ek4 ProSAT]</span></td></tr>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Attaining molecular-level control over solidification processes is a crucial aspect of materials science. To control ice formation, organisms have evolved bewildering arrays of ice-binding proteins (IBPs), but these have poorly understood structure-activity relationships. We propose that reverse engineering using de novo computational protein design can shed light on structure-activity relationships of IBPs. We hypothesized that the model alpha-helical winter flounder antifreeze protein uses an unusual undertwisting of its alpha-helix to align its putative ice-binding threonine residues in exactly the same direction. We test this hypothesis by designing a series of straight three-helix bundles with an ice-binding helix projecting threonines and two supporting helices constraining the twist of the ice-binding helix. Our findings show that ice-recrystallization inhibition by the designed proteins increases with the degree of designed undertwisting, thus validating our hypothesis, and opening up avenues for the computational design of IBPs.
 
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De novo designed ice-binding proteins from twist-constrained helices.,de Haas RJ, Tas RP, van den Broek D, Zheng C, Nguyen H, Kang A, Bera AK, King NP, Voets IK, de Vries R Proc Natl Acad Sci U S A. 2023 Jul 4;120(27):e2220380120. doi: , 10.1073/pnas.2220380120. Epub 2023 Jun 26. PMID:37364125<ref>PMID:37364125</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 8ek4" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
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Current revision

De novo designed ice-binding proteins from twist-constrained helices

PDB ID 8ek4

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