8gyh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:27, 3 April 2024) (edit) (undo)
 
Line 4: Line 4:
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[8gyh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_ficellus Streptomyces ficellus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8GYH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8GYH FirstGlance]. <br>
<table><tr><td colspan='2'>[[8gyh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_ficellus Streptomyces ficellus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8GYH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8GYH FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8gyh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8gyh OCA], [https://pdbe.org/8gyh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8gyh RCSB], [https://www.ebi.ac.uk/pdbsum/8gyh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8gyh ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8gyh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8gyh OCA], [https://pdbe.org/8gyh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8gyh RCSB], [https://www.ebi.ac.uk/pdbsum/8gyh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8gyh ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[https://www.uniprot.org/uniprot/A0A1W5T2G9_9ACTN A0A1W5T2G9_9ACTN]
[https://www.uniprot.org/uniprot/A0A1W5T2G9_9ACTN A0A1W5T2G9_9ACTN]
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
(2,6)-Diamino-(5,7)-dihydroxyheptanoic acid (DADH), a non-proteinogenic amino acid, is converted to 1-azabicyclo[3.1.0]hexane ring-containing amino acids that are subsequently incorporated into ficellomycin and vazabitide A. The present study revealed that the sugar aminotransferase-like enzymes Fic25 and Vzb9, with a high amino acid sequence identity (56%) to each other, synthesized stereoisomers of DADH with (6S) and (6R) configurations, respectively. The crystal structure of the Fic25 complex with a PLP-(6S)-N(2)-acetyl-DADH adduct indicated that Asn45 and Gln197 (Asn205 and Ala53 in Vzb9) were located at positions that affected the stereochemistry of DADH being synthesized. A modeling study suggested that amino acid substitutions between Fic25 and Vzb9 allowed the enzymes to bind to the substrate with almost 180 degrees rotation in the C5-C7 portions of the DADH molecules, accompanied by a concomitant shift in their C1-C4 portions. In support of this result, the replacement of two corresponding residues in Fic25 and Vzb9 increased (6R) and (6S) stereoselectivities, respectively. The different stereochemistry at C6 of DADH resulted in a different stereochemistry/orientation of the aziridine portion of the 1-azabicyclo[3.1.0]hexane ring, which plays a crucial role in biological activity, between ficellomycin and vazabitide A. A phylogenic analysis suggested that Fic25 and Vzb9 evolved from sugar aminotransferases to produce unusual building blocks for expanding the structural diversity of secondary metabolites.
 
- 
-
Mechanisms of Sugar Aminotransferase-like Enzymes to Synthesize Stereoisomers of Non-proteinogenic Amino Acids in Natural Product Biosynthesis.,Kurosawa S, Okamura H, Yoshida A, Tomita T, Sone Y, Hasebe F, Shinada T, Takikawa H, Kosono S, Nishiyama M ACS Chem Biol. 2023 Feb 17;18(2):385-395. doi: 10.1021/acschembio.2c00823. Epub , 2023 Jan 20. PMID:36669120<ref>PMID:36669120</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 8gyh" style="background-color:#fffaf0;"></div>
 
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>

Current revision

Crystal structure of Fic25 (apo form) from Streptomyces ficellus

PDB ID 8gyh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools