1jmm
From Proteopedia
(Difference between revisions)
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<StructureSection load='1jmm' size='340' side='right'caption='[[1jmm]], [[Resolution|resolution]] 2.40Å' scene=''> | <StructureSection load='1jmm' size='340' side='right'caption='[[1jmm]], [[Resolution|resolution]] 2.40Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1jmm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[1jmm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_mutans Streptococcus mutans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JMM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JMM FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> |
- | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jmm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jmm OCA], [https://pdbe.org/1jmm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jmm RCSB], [https://www.ebi.ac.uk/pdbsum/1jmm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jmm ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jmm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jmm OCA], [https://pdbe.org/1jmm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jmm RCSB], [https://www.ebi.ac.uk/pdbsum/1jmm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jmm ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
- | + | [https://www.uniprot.org/uniprot/PAC_STRMG PAC_STRMG] Surface protein antigen implicated in dental caries. | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jmm ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jmm ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | Antigens I/II are large multifunctional adhesins from oral viridans streptococci that exert immunomodulatory effects on human cells and play important roles in inflammatory disorders. Among them, Streptococcus mutans plays a major role in the initiation of dental caries. The structure of the V-region (SrV+, residues 464-840) of the antigen I/II of S. mutans has been determined using the multiwavelength anomalous diffraction phasing technique with seleno-methionine-substituted recombinant protein and subsequently refined at 2.4 A resolution. The crystal structure of SrV+ revealed a lectin-like fold that displays a putative preformed carbohydrate-binding site stabilized by a metal ion. Inhibition of this binding site may confer to humans a protection against dental caries and dissemination of the bacteria to extra-oral sites involved in life-threatening inflammatory diseases. This crystal structure constitutes a first step in understanding the structure-function relationship of antigens I/II and may help in delineating new preventive or therapeutic strategies against colonization of the host by oral streptococci. | ||
- | |||
- | Crystal structure of the V-region of Streptococcus mutans antigen I/II at 2.4 A resolution suggests a sugar preformed binding site.,Troffer-Charlier N, Ogier J, Moras D, Cavarelli J J Mol Biol. 2002 Apr 19;318(1):179-88. PMID:12054777<ref>PMID:12054777</ref> | ||
- | |||
- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 1jmm" style="background-color:#fffaf0;"></div> | ||
- | == References == | ||
- | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: Atcc 25175]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Cavarelli | + | [[Category: Streptococcus mutans]] |
- | [[Category: Moras | + | [[Category: Cavarelli J]] |
- | [[Category: Ogier | + | [[Category: Moras D]] |
- | [[Category: Troffer-Charlier | + | [[Category: Ogier J]] |
- | + | [[Category: Troffer-Charlier N]] | |
- | + | ||
- | + | ||
- | + |
Revision as of 07:53, 3 April 2024
Crystal structure of the V-region of Streptococcus mutans antigen I/II
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