1k1c
From Proteopedia
(Difference between revisions)
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==Solution Structure of Crh, the Bacillus subtilis Catabolite Repression HPr== | ==Solution Structure of Crh, the Bacillus subtilis Catabolite Repression HPr== | ||
- | <StructureSection load='1k1c' size='340' side='right'caption='[[1k1c | + | <StructureSection load='1k1c' size='340' side='right'caption='[[1k1c]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1k1c]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[1k1c]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K1C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K1C FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k1c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k1c OCA], [https://pdbe.org/1k1c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k1c RCSB], [https://www.ebi.ac.uk/pdbsum/1k1c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k1c ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k1c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k1c OCA], [https://pdbe.org/1k1c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k1c RCSB], [https://www.ebi.ac.uk/pdbsum/1k1c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k1c ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
- | + | [https://www.uniprot.org/uniprot/CRH_BACSU CRH_BACSU] Along with seryl-phosphorylated HPr, phosphorylated Crh is implicated in carbon catabolite repression (CCR) of levanase, inositol dehydrogenase, and beta-xylosidase. Exerts its effect on CCR by interacting with CcpA.<ref>PMID:9237995</ref> <ref>PMID:16316990</ref> | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1k1c ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1k1c ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | The solution structure and dynamics of the Bacillus subtilis HPr-like protein, Crh, have been investigated using NMR spectroscopy. Crh exhibits high sequence identity (45 %) to the histidine-containing protein (HPr), a phospho-carrier protein of the phosphoenolpyruvate (PEP):carbohydrate phosphotransferase system, but contains no catalytic His15, the site of PEP-dependent phosphorylation in HPr. Crh also forms a mixture of monomers and dimers in solution whereas HPr is known to be monomeric. Complete backbone and side-chain assignments were obtained for the monomeric form, and 60 % of the dimer backbone resonances; allowing the identification of the Crh dimer interface from chemical-shift mapping. The conformation of Crh was determined to a precision of 0.46(+/-0.06) A for the backbone atoms, and 1.01(+/-0.08) A for the heavy atoms. The monomer structure is similar to that of known HPr 2.67(+/-0.22) A (C(alpha) rmsd), but has a few notable differences, including a change in the orientation of one of the helices (B), and a two-residue shift in beta-sheet pairing of the N-terminal strand with the beta4 strand. This shift results in a shortening of the surface loop present in HPr and consequently provides a flatter surface in the region of dimerisation contact, which may be related to the different oligomeric nature of these two proteins. A binding site of phospho-serine(P-Ser)-Crh with catabolite control protein A (CcpA) is proposed on the basis of highly conserved surface side-chains between Crh and HPr. This binding site is consistent with the model of a dimer-dimer interaction between P-Ser-Crh and CcpA. (15)N relaxation measured in the monomeric form also identified differential local mobility in the helix B which is located in the vicinity of this site. | ||
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- | Solution structure and dynamics of Crh, the Bacillus subtilis catabolite repression HPr.,Favier A, Brutscher B, Blackledge M, Galinier A, Deutscher J, Penin F, Marion D J Mol Biol. 2002 Mar 15;317(1):131-44. PMID:11916384<ref>PMID:11916384</ref> | ||
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- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 1k1c" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Bacillus subtilis]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Blackledge | + | [[Category: Blackledge M]] |
- | [[Category: Brutscher | + | [[Category: Brutscher B]] |
- | [[Category: Deutscher | + | [[Category: Deutscher J]] |
- | [[Category: Favier | + | [[Category: Favier A]] |
- | [[Category: Galinier | + | [[Category: Galinier A]] |
- | [[Category: Marion | + | [[Category: Marion D]] |
- | [[Category: Penin | + | [[Category: Penin F]] |
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Revision as of 07:56, 3 April 2024
Solution Structure of Crh, the Bacillus subtilis Catabolite Repression HPr
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