1k9c
From Proteopedia
(Difference between revisions)
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==Solution Structure of Calreticulin P-domain subdomain (residues 189-261)== | ==Solution Structure of Calreticulin P-domain subdomain (residues 189-261)== | ||
- | <StructureSection load='1k9c' size='340' side='right'caption='[[1k9c | + | <StructureSection load='1k9c' size='340' side='right'caption='[[1k9c]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1k9c]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[1k9c]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K9C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K9C FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k9c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k9c OCA], [https://pdbe.org/1k9c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k9c RCSB], [https://www.ebi.ac.uk/pdbsum/1k9c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k9c ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k9c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k9c OCA], [https://pdbe.org/1k9c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k9c RCSB], [https://www.ebi.ac.uk/pdbsum/1k9c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k9c ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
- | + | [https://www.uniprot.org/uniprot/CALR_RAT CALR_RAT] Calcium-binding chaperone that promotes folding, oligomeric assembly and quality control in the endoplasmic reticulum (ER) via the calreticulin/calnexin cycle. This lectin interacts transiently with almost all of the monoglucosylated glycoproteins that are synthesized in the ER. Interacts with the DNA-binding domain of NR3C1 and mediates its nuclear export. Involved in maternal gene expression regulation. May participate in oocyte maturation via the regulation of calcium homeostasis (By similarity). | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1k9c ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1k9c ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | Calreticulin (CRT) is an abundant, soluble molecular chaperone of the endoplasmic reticulum. Similar to its membrane-bound homolog calnexin (CNX), it is a lectin that promotes the folding of proteins carrying N-linked glycans. Both proteins cooperate with an associated co-chaperone, the thiol-disulfide oxidoreductase ERp57. This enzyme catalyzes the formation of disulfide bonds in CNX and CRT-bound glycoprotein substrates. Previously, we solved the NMR structure of the central proline-rich P-domain of CRT comprising residues 189-288. This structure shows an extended hairpin topology, with three short anti-parallel beta-sheets, three small hydrophobic clusters, and one helical turn at the tip of the hairpin. We further demonstrated that the residues 225-251 at the tip of the CRT P-domain are involved in direct contacts with ERp57. Here, we show that the CRT P-domain fragment CRT(221-256) constitutes an autonomous folding unit, and has a structure highly similar to that of the corresponding region in CRT(189-288). Of the 36 residues present in CRT(221-256), 32 form a well-structured core, making this fragment one of the smallest known natural sequences to form a stable non-helical fold in the absence of disulfide bonds or tightly bound metal ions. CRT(221-256) comprises all the residues of the intact P-domain that were shown to interact with ERp57. Isothermal titration microcalorimetry (ITC) now showed affinity of this fragment for ERp57 similar to that of the intact P-domain, demonstrating that CRT(221-256) may be used as a low molecular mass mimic of CRT for further investigations of the interaction with ERp57. We also solved the NMR structure of the 73-residue fragment CRT(189-261), in which the tip of the hairpin and the first beta-sheet are well structured, but the residues 189-213 are disordered, presumably due to lack of stabilizing interactions across the hairpin. | ||
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- | NMR structures of 36 and 73-residue fragments of the calreticulin P-domain.,Ellgaard L, Bettendorff P, Braun D, Herrmann T, Fiorito F, Jelesarov I, Guntert P, Helenius A, Wuthrich K J Mol Biol. 2002 Sep 27;322(4):773-84. PMID:12270713<ref>PMID:12270713</ref> | ||
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- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 1k9c" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
*[[Calreticulin 3D structures|Calreticulin 3D structures]] | *[[Calreticulin 3D structures|Calreticulin 3D structures]] | ||
- | == References == | ||
- | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: Buffalo rat]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Bettendorff | + | [[Category: Rattus norvegicus]] |
- | [[Category: Braun | + | [[Category: Bettendorff P]] |
- | [[Category: Ellgaard | + | [[Category: Braun D]] |
- | [[Category: Fiorito | + | [[Category: Ellgaard L]] |
- | [[Category: Guntert | + | [[Category: Fiorito F]] |
- | [[Category: Helenius | + | [[Category: Guntert P]] |
- | [[Category: Herrmann | + | [[Category: Helenius A]] |
- | [[Category: Wuthrich | + | [[Category: Herrmann T]] |
- | + | [[Category: Wuthrich K]] | |
- | + |
Revision as of 07:58, 3 April 2024
Solution Structure of Calreticulin P-domain subdomain (residues 189-261)
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