1m7l
From Proteopedia
(Difference between revisions)
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==Solution Structure of the Coiled-Coil Trimerization Domain from Lung Surfactant Protein D== | ==Solution Structure of the Coiled-Coil Trimerization Domain from Lung Surfactant Protein D== | ||
- | <StructureSection load='1m7l' size='340' side='right'caption='[[1m7l | + | <StructureSection load='1m7l' size='340' side='right'caption='[[1m7l]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1m7l]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[1m7l]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M7L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1M7L FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1m7l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m7l OCA], [https://pdbe.org/1m7l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1m7l RCSB], [https://www.ebi.ac.uk/pdbsum/1m7l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m7l ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1m7l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m7l OCA], [https://pdbe.org/1m7l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1m7l RCSB], [https://www.ebi.ac.uk/pdbsum/1m7l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m7l ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
- | + | [https://www.uniprot.org/uniprot/SFTPD_HUMAN SFTPD_HUMAN] Contributes to the lung's defense against inhaled microorganisms. May participate in the extracellular reorganization or turnover of pulmonary surfactant. Binds strongly maltose residues and to a lesser extent other alpha-glucosyl moieties. | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m7l ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m7l ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | Surfactant protein D (SP-D) is one of four known protein components of the pulmonary surfactant lining the lung alveoli. It is involved in immune and allergic responses. SP-D occurs as a tetramer of trimers. Trimerization is thought to be initiated by a coiled coil domain. We have determined the solution structure of a 64-residue peptide encompassing the coiled coil domain of human SP-D. As predicted, the domain forms a triple-helical parallel coiled coil. As with all symmetric oligomers, the structure calculation was complicated by the symmetry degeneracy in the NMR spectra. We used the symmetry-ADR (ambiguous distance restraint) structure calculation method to solve the structure. The results demonstrate that the leucine zipper region of SP-D is an autonomously folded domain. The structure is very similar to the independently determined X-ray crystal structure, differing mainly at a single residue, Tyr248. This residue is completely symmetric in the solution structure, and markedly asymmetric in the crystalline phase. This difference may be functionally important, as it affects the orientation of the antigenic surface presented by SP-D. | ||
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- | Solution structure of the coiled-coil trimerization domain from lung surfactant protein D.,Kovacs H, O'Ddonoghue SI, Hoppe HJ, Comfort D, Reid KB, Campbell D, Nilges M J Biomol NMR. 2002 Oct;24(2):89-102. PMID:12495025<ref>PMID:12495025</ref> | ||
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- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 1m7l" style="background-color:#fffaf0;"></div> | ||
- | == References == | ||
- | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Homo sapiens]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Campbell | + | [[Category: Campbell ID]] |
- | [[Category: Comfort | + | [[Category: Comfort D]] |
- | + | [[Category: Hoppe H-J]] | |
- | [[Category: Hoppe | + | [[Category: Kovacs H]] |
- | [[Category: Kovacs | + | [[Category: Nilges M]] |
- | [[Category: Nilges | + | [[Category: O'Donoghue SI]] |
- | [[Category: | + | [[Category: Reid KBM]] |
- | [[Category: | + | |
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Revision as of 08:32, 10 April 2024
Solution Structure of the Coiled-Coil Trimerization Domain from Lung Surfactant Protein D
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Categories: Homo sapiens | Large Structures | Campbell ID | Comfort D | Hoppe H-J | Kovacs H | Nilges M | O'Donoghue SI | Reid KBM