1mvz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==NMR solution structure of a Bowman Birk inhibitor isolated from snail medic seeds (Medicago Scutellata)==
==NMR solution structure of a Bowman Birk inhibitor isolated from snail medic seeds (Medicago Scutellata)==
-
<StructureSection load='1mvz' size='340' side='right'caption='[[1mvz]], [[NMR_Ensembles_of_Models | 15 NMR models]]' scene=''>
+
<StructureSection load='1mvz' size='340' side='right'caption='[[1mvz]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1mvz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Medicago_scutellata Medicago scutellata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MVZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MVZ FirstGlance]. <br>
<table><tr><td colspan='2'>[[1mvz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Medicago_scutellata Medicago scutellata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MVZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MVZ FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mvz OCA], [https://pdbe.org/1mvz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mvz RCSB], [https://www.ebi.ac.uk/pdbsum/1mvz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mvz ProSAT]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mvz OCA], [https://pdbe.org/1mvz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mvz RCSB], [https://www.ebi.ac.uk/pdbsum/1mvz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mvz ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/IBB_MEDSC IBB_MEDSC]] Inhibits trypsin but not chymotrypsin. Inhibits the trypsin-like proteinase activity present in larvae of the crop pests Adoxophyes orana, Hyphantria cunea, Lobesia botrana and Ostrinia nubilalis.<ref>PMID:9014368</ref>
+
[https://www.uniprot.org/uniprot/IBB_MEDSC IBB_MEDSC] Inhibits trypsin but not chymotrypsin. Inhibits the trypsin-like proteinase activity present in larvae of the crop pests Adoxophyes orana, Hyphantria cunea, Lobesia botrana and Ostrinia nubilalis.<ref>PMID:9014368</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 18: Line 19:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mvz ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mvz ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
The high-resolution three-dimensional structure of a Bowman Birk inhibitor, purified from snail medic seeds (Medicago scutellata) (MSTI), has been determined in solution by 1H NMR spectroscopy at pH 5.6 and 27 degrees C. The structure of MSTI comprises two distinct symmetric domains each composed of a three-stranded beta-sheet containing a VIb type loop, where the active sites are located. A characteristic geometry of three aromatic residues confers stability to this protein, and we observe that this feature is conserved in all the Bowman Birk inhibitors of known structure. The two active domains exhibit different conformational features: the second domain displays higher flexibility and hydrophobicity with respect to the first one, and these properties have been correlated to a lower trypsin inhibitory specificity, in agreement with titration studies that have shown a stoichiometric ratio MSTI:trypsin of 1:1.5. NMR analysis indicated that MSTI undergoes self-association at concentrations higher than 2 mM, and the residues involved in this mechanism are localized at opposite faces of the molecule, having the highest positive and negative potential, respectively, thus indicating that electrostatic intermolecular interactions are the driving forces for MSTI association. Most of the residues affected by self-association are highly conserved in BBIs from different seeds, suggesting a functional relevance for these charged superficial patches, possibly involved in the interaction with other enzymes or macromolecules, thus triggering anti-carcinogenic activity.
 
- 
-
Anticarcinogenic Bowman Birk inhibitor isolated from snail medic seeds (Medicago scutellata): solution structure and analysis of self-association behavior.,Catalano M, Ragona L, Molinari H, Tava A, Zetta L Biochemistry. 2003 Mar 18;42(10):2836-46. PMID:12627949<ref>PMID:12627949</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 1mvz" style="background-color:#fffaf0;"></div>
 
== References ==
== References ==
<references/>
<references/>
Line 33: Line 25:
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Medicago scutellata]]
[[Category: Medicago scutellata]]
-
[[Category: Catalano, M]]
+
[[Category: Catalano M]]
-
[[Category: Molinari, H]]
+
[[Category: Molinari H]]
-
[[Category: Ragona, L]]
+
[[Category: Ragona L]]
-
[[Category: Tava, A]]
+
[[Category: Tava A]]
-
[[Category: Zetta, L]]
+
[[Category: Zetta L]]
-
[[Category: Hydrolase inhibitor]]
+
-
[[Category: Serine protease inhibitor]]
+
-
[[Category: Three stranded beta-sheet]]
+
-
[[Category: Vib type turn]]
+

Revision as of 08:42, 10 April 2024

NMR solution structure of a Bowman Birk inhibitor isolated from snail medic seeds (Medicago Scutellata)

PDB ID 1mvz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools