User:Karisma Moll/Sandbox 1

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Line 34: Line 34:
=== Catalytic Triad ===
=== Catalytic Triad ===
<scene name='10/1037491/Catalytic_domain/3'>catalytic domain</scene>
<scene name='10/1037491/Catalytic_domain/3'>catalytic domain</scene>
-
 
+
<scene name='10/1037493/Oxyanion_hole/1'>oxyanion hole</scene>
<ref name="Hiramatsu"/>
<ref name="Hiramatsu"/>
=== Mechanism ===
=== Mechanism ===
Line 48: Line 48:
=== HIV/AIDS ===
=== HIV/AIDS ===
 +
 +
=== Current Scene Student Contributions ===
 +
 +
==== Sam ====
 +
<scene name='10/1037491/Vildagliptin_intxns/2'>vildagliptin</scene>
 +
<scene name='10/1037491/Vildagliptin_binding/1'>vildagliptin binding</scene>
 +
<scene name='10/1037491/Dppiv_with_vildagliptin_movie/3'>DPPIV intro movie</scene>
 +
<scene name='10/1037491/Catalytic_domain/3'>catalytic domain</scene>
 +
==== Merritt ====
 +
<scene name='10/1037493/Beta_propeller/1'>DPPIV beta propellor</scene>
 +
<scene name='10/1037493/Oxyanion_hole/1'>TextToBeDisplayed</scene>
 +
==== Karisma ====
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<scene name='10/1037489/Binding_pockets_with_surface/1'>binding pockets</scene>
 +
<scene name='10/1037489/Sax_interactions_wip/1'>sax interactions wip</scene> (doesn't currently work, I don't know why)
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<scene name='10/1037489/Sax_intxn_labeled/1'>Sax inxtn lab</scene> (same here)
 +
<scene name='10/1037489/Sax_intxn/1'>sax intxn</scene> (same)
 +
<scene name='10/1037489/Vildagliptin_intxns/1'>vild intxn</scene> (does work)
 +
<scene name='10/1037489/Vildagliptin_in_pockets/1'>pocket</scene> (does work, could remove catalytic triad and rework)
 +
<scene name='10/1037489/Catalytic_triad/5'>catalytic triad</scene>

Revision as of 02:07, 11 April 2024

DPPIV in Humans

PDB 6B1E for DPPIV in complex with Vildagliptin

Drag the structure with the mouse to rotate

References

  1. Ahrén B. DPP-4 Inhibition and the Path to Clinical Proof. Front Endocrinol (Lausanne). 2019 Jun 19;10:376. PMID:31275243 doi:10.3389/fendo.2019.00376
  2. Khalse M, Bhargava A. A Review on Cardiovascular Outcome Studies of Dipeptidyl Peptidase-4 Inhibitors. Indian J Endocrinol Metab. 2018 Sep-Oct;22(5):689-695. PMID:30294582 doi:10.4103/ijem.IJEM_104_18
  3. Hocher B, Reichetzeder C, Alter ML. Renal and cardiac effects of DPP4 inhibitors--from preclinical development to clinical research. Kidney Blood Press Res. 2012;36(1):65-84. PMID:22947920 doi:10.1159/000339028
  4. Zhong J, Rajagopalan S. Dipeptidyl Peptidase-4 Regulation of SDF-1/CXCR4 Axis: Implications for Cardiovascular Disease. Front Immunol. 2015 Sep 25;6:477. PMID:26441982 doi:10.3389/fimmu.2015.00477
  5. Sharma A, Ren X, Zhang H, Pandey GN. Effect of depression and suicidal behavior on neuropeptide Y (NPY) and its receptors in the adult human brain: A postmortem study. Prog Neuropsychopharmacol Biol Psychiatry. 2022 Jan 10;112:110428. PMID:34411658 doi:10.1016/j.pnpbp.2021.110428
  6. Ntafam CN, Beutler BD, Harris RD. Incarcerated gravid uterus: A rare but potentially devastating obstetric complication. Radiol Case Rep. 2022 Mar 10;17(5):1583-1586. PMID:35309386 doi:10.1016/j.radcr.2022.02.034
  7. 7.0 7.1 Hiramatsu H, Kyono K, Higashiyama Y, Fukushima C, Shima H, Sugiyama S, Inaka K, Yamamoto A, Shimizu R. The structure and function of human dipeptidyl peptidase IV, possessing a unique eight-bladed beta-propeller fold. Biochem Biophys Res Commun. 2003 Mar 21;302(4):849-54. PMID:12646248
  8. Abbott CA, McCaughan GW, Levy MT, Church WB, Gorrell MD. Binding to human dipeptidyl peptidase IV by adenosine deaminase and antibodies that inhibit ligand binding involves overlapping, discontinuous sites on a predicted beta propeller domain. Eur J Biochem. 1999 Dec;266(3):798-810. PMID:10583373 doi:10.1046/j.1432-1327.1999.00902.x

Student Contributors

  • Karisma Moll
  • Merritt Jugo
  • Sam Magnabosco

Proteopedia Page Contributors and Editors (what is this?)

Karisma Moll

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