1ogq

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<StructureSection load='1ogq' size='340' side='right'caption='[[1ogq]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
<StructureSection load='1ogq' size='340' side='right'caption='[[1ogq]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[1ogq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/French_bean French bean]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OGQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OGQ FirstGlance]. <br>
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<table><tr><td colspan='2'>[[1ogq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Phaseolus_vulgaris Phaseolus vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OGQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OGQ FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ogq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ogq OCA], [https://pdbe.org/1ogq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ogq RCSB], [https://www.ebi.ac.uk/pdbsum/1ogq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ogq ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ogq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ogq OCA], [https://pdbe.org/1ogq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ogq RCSB], [https://www.ebi.ac.uk/pdbsum/1ogq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ogq ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/PGIP2_PHAVU PGIP2_PHAVU]] Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi. Inhibits all polygalacturonases (PG) tested, with the exception of PG from F.oxysporum which was only inhibited at 60%.
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[https://www.uniprot.org/uniprot/PGIP2_PHAVU PGIP2_PHAVU] Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi. Inhibits all polygalacturonases (PG) tested, with the exception of PG from F.oxysporum which was only inhibited at 60%.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ogq ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ogq ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Polygalacturonase-inhibiting proteins (PGIPs) are plant cell wall proteins that protect plants from fungal invasion. They interact with endopolygalacturonases secreted by phytopathogenic fungi, inhibit their enzymatic activity, and favor the accumulation of oligogalacturonides, which activate plant defense responses. PGIPs are members of the leucine-rich repeat (LRR) protein family that in plants play crucial roles in development, defense against pathogens, and recognition of beneficial microbes. Here we report the crystal structure at 1.7-A resolution of a PGIP from Phaseolus vulgaris. The structure is characterized by the presence of two beta-sheets instead of the single one originally predicted by modeling studies. The structure also reveals a negatively charged surface on the LRR concave face, likely involved in binding polygalacturonases. The structural information on PGIP provides a basis for designing more efficient inhibitors for plant protection.
 
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The crystal structure of polygalacturonase-inhibiting protein (PGIP), a leucine-rich repeat protein involved in plant defense.,Di Matteo A, Federici L, Mattei B, Salvi G, Johnson KA, Savino C, De Lorenzo G, Tsernoglou D, Cervone F Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):10124-8. Epub 2003 Aug 6. PMID:12904578<ref>PMID:12904578</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 1ogq" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: French bean]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Cervone, F]]
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[[Category: Phaseolus vulgaris]]
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[[Category: Federici, L]]
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[[Category: Cervone F]]
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[[Category: Johnson, K A]]
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[[Category: De Lorenzo G]]
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[[Category: Lorenzo, G De]]
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[[Category: Di Matteo A]]
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[[Category: Mattei, B]]
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[[Category: Federici L]]
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[[Category: Matteo, A Di]]
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[[Category: Johnson KA]]
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[[Category: Salvi, G]]
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[[Category: Mattei B]]
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[[Category: Savino, C]]
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[[Category: Salvi G]]
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[[Category: Tsernoglou, D]]
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[[Category: Savino C]]
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[[Category: Inhibitor]]
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[[Category: Tsernoglou D]]
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[[Category: Polygalacturonase inhibiting protein]]
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Revision as of 05:47, 17 April 2024

The crystal structure of PGIP (polygalacturonase inhibiting protein), a leucine rich repeat protein involved in plant defense

PDB ID 1ogq

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