1p6q
From Proteopedia
(Difference between revisions)
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==NMR Structure of the Response regulator CheY2 from Sinorhizobium meliloti, complexed with Mg++== | ==NMR Structure of the Response regulator CheY2 from Sinorhizobium meliloti, complexed with Mg++== | ||
- | <StructureSection load='1p6q' size='340' side='right'caption='[[1p6q | + | <StructureSection load='1p6q' size='340' side='right'caption='[[1p6q]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1p6q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[1p6q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sinorhizobium_meliloti Sinorhizobium meliloti]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P6Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1P6Q FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1p6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1p6q OCA], [https://pdbe.org/1p6q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1p6q RCSB], [https://www.ebi.ac.uk/pdbsum/1p6q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1p6q ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1p6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1p6q OCA], [https://pdbe.org/1p6q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1p6q RCSB], [https://www.ebi.ac.uk/pdbsum/1p6q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1p6q ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/Q52884_RHIML Q52884_RHIML] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1p6q ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1p6q ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | The chemotactic signalling chain to the flagellar motor of Sinorhizobium meliloti features a new type of response regulator, CheY2. CheY2 activated by phosphorylation (CheY2-P) controls the rotary speed of the flagellar motor (instead of reversing the sense of rotation), and it is efficiently dephosphorylated by phospho-retrotransfer to the cognate kinase, CheA. Here, we report the NMR solution structures of the Mg(2+)-complex of inactive CheY2, and of activated CheY2-BeF(3), a stable analogue of CheY2-P, to an overall root mean square deviation of 0.042 nm and 0.027 nm, respectively. The 14 kDa CheY2 protein exhibits a characteristic open (alpha/beta)(5) conformation. Modification of CheY2 by BeF(3)(-) leads to large conformational changes of the protein, which are in the limits of error identical with those observed by phosphorylation of the active-centre residue Asp58. In BeF(3)-activated CheY2, the position of Thr88-OH favours the formation of a hydrogen bond with the active site, Asp58-BeF(3), similar to BeF(3)-activated CheY from Escherichia coli. In contrast to E.coli, this reorientation is not involved in a Tyr-Thr-coupling mechanism, that propagates the signal from the incoming phosphoryl group to the C-terminally located FliM-binding surface. Rather, a rearrangement of the Phe59 side-chain to interact with Ile86-Leu95-Val96 along with a displacement of alpha4 towards beta5 is stabilised in S.meliloti. The resulting, activation-induced, compact alpha4-beta5-alpha5 surface forms a unique binding domain suited for specific interaction with and signalling to a rotary motor that requires a gradual speed control. We propose that these new features of response regulator activation, compared to other two-component systems, are the key for the observed unique phosphorylation, dephosphorylation and motor control mechanisms in S.meliloti. | ||
- | |||
- | Solution structures of the inactive and BeF3-activated response regulator CheY2.,Riepl H, Scharf B, Schmitt R, Kalbitzer HR, Maurer T J Mol Biol. 2004 Apr 23;338(2):287-97. PMID:15066432<ref>PMID:15066432</ref> | ||
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- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 1p6q" style="background-color:#fffaf0;"></div> | ||
- | == References == | ||
- | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: Atcc 9930]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Kalbitzer, H R]] | ||
- | [[Category: Maurer, T]] | ||
- | [[Category: Riepl, H]] | ||
- | [[Category: SPINE, Structural Proteomics in Europe]] | ||
- | [[Category: Scharf, B]] | ||
- | [[Category: Schmitt, R]] | ||
- | [[Category: Chemotaxis]] | ||
- | [[Category: Chey2]] | ||
- | [[Category: Response regulator]] | ||
- | [[Category: Signal transduction]] | ||
- | [[Category: Signaling protein]] | ||
[[Category: Sinorhizobium meliloti]] | [[Category: Sinorhizobium meliloti]] | ||
- | [[Category: | + | [[Category: Kalbitzer HR]] |
- | [[Category: | + | [[Category: Maurer T]] |
- | [[Category: | + | [[Category: Riepl H]] |
+ | [[Category: Scharf B]] | ||
+ | [[Category: Schmitt R]] |
Revision as of 05:53, 17 April 2024
NMR Structure of the Response regulator CheY2 from Sinorhizobium meliloti, complexed with Mg++
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