1r6p
From Proteopedia
(Difference between revisions)
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==NMR structure of the N-terminal domain of trout cardiac troponin C at 7 C== | ==NMR structure of the N-terminal domain of trout cardiac troponin C at 7 C== | ||
- | <StructureSection load='1r6p' size='340' side='right'caption='[[1r6p | + | <StructureSection load='1r6p' size='340' side='right'caption='[[1r6p]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1r6p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[1r6p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oncorhynchus_mykiss Oncorhynchus mykiss]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R6P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1R6P FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
- | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r6p OCA], [https://pdbe.org/1r6p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1r6p RCSB], [https://www.ebi.ac.uk/pdbsum/1r6p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r6p ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r6p OCA], [https://pdbe.org/1r6p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1r6p RCSB], [https://www.ebi.ac.uk/pdbsum/1r6p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r6p ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/Q7ZZB9_ONCMY Q7ZZB9_ONCMY] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1r6p ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1r6p ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | Adaptation for life at different temperatures can cause changes in many aspects of an organism. One example is the expression of different protein isoforms in species adapted to different temperatures. The calcium regulatory protein cardiac troponin C (cTnC), from rainbow trout (Oncorhynchus mykiss), is a good model for studying temperature effects, both because of its low physiological temperature and because mammalian cTnC, extensively studied at higher temperatures, can be used for comparison. We determined the structure and studied the backbone dynamics of the regulatory domain of trout cardiac troponin C (ScNTnC) with one Ca(2+) bound at 7 and 30 degrees C, using nuclear magnetic resonance spectroscopy (NMR). The overall fold of the regulatory domain of trout cTnC at both temperatures is similar to the regulatory domain of mammalian (human, bovine, and porcine isoform) cTnC bound to one Ca(2+). By comparing the trout structures at the two temperatures, we identify differences between the positions of the helices flanking the calcium binding loops, and the overall structure at 7 degrees C is more compact than that at 30 degrees C. The structure at 7 degrees C is more similar to the mammalian cTnC, which was determined at 30 degrees C, indicating that they have the same conformation at their respective physiological temperatures. The dynamic properties of the regulatory domain of trout cTnC are similar at the two temperatures that were used in these studies. | ||
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- | Effect of temperature on the structure of trout troponin C.,Blumenschein TM, Gillis TE, Tibbits GF, Sykes BD Biochemistry. 2004 May 4;43(17):4955-63. PMID:15109253<ref>PMID:15109253</ref> | ||
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- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 1r6p" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
- | *[[Troponin|Troponin]] | + | *[[Troponin 3D structures|Troponin 3D structures]] |
- | + | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: | + | [[Category: Oncorhynchus mykiss]] |
- | [[Category: Blumenschein | + | [[Category: Blumenschein TM]] |
- | [[Category: Gillis | + | [[Category: Gillis TE]] |
- | [[Category: Sykes | + | [[Category: Sykes BD]] |
- | [[Category: Tibbits | + | [[Category: Tibbits GF]] |
- | + | ||
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Revision as of 06:10, 17 April 2024
NMR structure of the N-terminal domain of trout cardiac troponin C at 7 C
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