Sandbox Ben Whiteside

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It is hypothesized that amylin binds to the receptor via a two-domain model (Figure 2). The model suggests a series of steps for how amylin binds. First, the c-terminus of amylin binds to the n terminus of the extracellular domain of the receptor. This binding factors the alignment of amylin's n-terminus to the primary GPCR binding site. Once both the c-terminus and n-terminus of amylin are bound, the receptor becomes activated. [[Image:Domain_drawingnew.jpg|300px|left|thumb|Figure 2: The Two Domain Model]]
It is hypothesized that amylin binds to the receptor via a two-domain model (Figure 2). The model suggests a series of steps for how amylin binds. First, the c-terminus of amylin binds to the n terminus of the extracellular domain of the receptor. This binding factors the alignment of amylin's n-terminus to the primary GPCR binding site. Once both the c-terminus and n-terminus of amylin are bound, the receptor becomes activated. [[Image:Domain_drawingnew.jpg|300px|left|thumb|Figure 2: The Two Domain Model]]
====RAMP-CTR Interface====
====RAMP-CTR Interface====
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<scene name='10/1038828/Ramp_ctr_interface/9'>RAMP CTR Interface </scene> is a key interaction that stabilizes the protein complex and positions the receptor to favorably bind to amylin. The RAMP-CTR interface extends into the plasma membrane, providing additional non-covalent bonding between the protein complex and the cell membrane.
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The <scene name='10/1038828/Ramp_ctr_interface/9'>RAMP CTR Interface </scene> is a key interaction that stabilizes the protein complex and positions the receptor to favorably bind to amylin. The RAMP-CTR interface extends into the plasma membrane, providing additional non-covalent bonding between the protein complex and the cell membrane.
==== Extracellular Domain - RAMP interactions ====
==== Extracellular Domain - RAMP interactions ====
The extracellular domain of the CTR primarily contains polar residues in the extracellular space. In order to orient these residues to facilitate amylin binding, <scene name='10/1038828/Ctr_ramp_ecd_stablization/7'>RAMP makes hydrogen bonds with the CTR</scene> to increase the rigidity of the receptor binding site.
The extracellular domain of the CTR primarily contains polar residues in the extracellular space. In order to orient these residues to facilitate amylin binding, <scene name='10/1038828/Ctr_ramp_ecd_stablization/7'>RAMP makes hydrogen bonds with the CTR</scene> to increase the rigidity of the receptor binding site.

Revision as of 22:06, 28 April 2024

AMYR

AMYR Bound to Amylin

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Student Contributors

Andrew Helmerich, Mathias Vander Eide, Ben Whiteside

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