2ksz
From Proteopedia
(Difference between revisions)
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==The solution structure of the Magnesium bound soybean calmodulin isoform 4 N-domain== | ==The solution structure of the Magnesium bound soybean calmodulin isoform 4 N-domain== | ||
- | <StructureSection load='2ksz' size='340' side='right'caption='[[2ksz | + | <StructureSection load='2ksz' size='340' side='right'caption='[[2ksz]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[2ksz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[2ksz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KSZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KSZ FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
- | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ksz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ksz OCA], [https://pdbe.org/2ksz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ksz RCSB], [https://www.ebi.ac.uk/pdbsum/2ksz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ksz ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ksz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ksz OCA], [https://pdbe.org/2ksz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ksz RCSB], [https://www.ebi.ac.uk/pdbsum/2ksz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ksz ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/Q39890_SOYBN Q39890_SOYBN] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ksz ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ksz ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | Soybean calmodulin isoform 4 (sCaM4) is a plant calcium binding protein, regulating cellular responses to the second messenger Ca(2+). We have found that the metal ion free (apo-) form of sCaM4 possesses a half unfolded structure, with the N-terminal domain unfolded and the C-terminal domain folded. This result was unexpected as the apo-forms of both soybean calmodulin isoform 1 (sCaM1) and mammalian CaM (mCaM) are fully folded. Due to the fact that free Mg(2+) ions are always present at high concentrations in cells (0.5 approximately 2 mM), we suggest that Mg(2+) should be bound to sCaM4 in non-activated cells. CD studies revealed that in the presence of Mg(2+) the initially unfolded N-terminal domain of sCaM4 folds into an alpha-helix-rich structure, similar to the Ca(2+)-form. We have used the NMR backbone residual dipolar coupling (RDC) restraints (1)D(NH), (1)D(CalphaHalpha), and (1)D(C)'(Calpha) to determine the solution structure of the N-terminal domain of Mg(2+)-sCaM4 (Mg(2+)-sCaM4-NT). Compared with the known structure of Ca(2+)-sCaM4, the structure of the Mg(2+)-sCaM4-NT does not fully open the hydrophobic pocket, which was further confirmed by the use of the fluorescent probe ANS. Tryptophan fluorescence experiments were used to study the interactions between Mg(2+)-sCaM4 and CaM-binding peptides derived from smooth muscle myosin light chain kinase as well as plant glutamate decarboxylase. These results suggest that Mg(2+)-sCaM4 does not bind to Ca(2+)-CaM target peptides, and therefore is functionally similar to apo-mCaM. The Mg(2+)- and apo- structures of the sCaM4-NT provide unique insights into the structure and function of some plant calmodulins in resting cells. | ||
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- | The solution structure of the Mg(2+)- form of soybean calmodulin isoform 4 reveals unique features of plant calmodulins in resting cells.,Huang H, Ishida H, Vogel HJ Protein Sci. 2010 Jan 6. PMID:20054830<ref>PMID:20054830</ref> | ||
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- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 2ksz" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
*[[Calmodulin 3D structures|Calmodulin 3D structures]] | *[[Calmodulin 3D structures|Calmodulin 3D structures]] | ||
- | == References == | ||
- | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: Glycine | + | [[Category: Glycine max]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Huang | + | [[Category: Huang H]] |
- | [[Category: Ishida | + | [[Category: Ishida H]] |
- | [[Category: Vogel | + | [[Category: Vogel HJ]] |
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Current revision
The solution structure of the Magnesium bound soybean calmodulin isoform 4 N-domain
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