2kyd
From Proteopedia
(Difference between revisions)
| Line 7: | Line 7: | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kyd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kyd OCA], [https://pdbe.org/2kyd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kyd RCSB], [https://www.ebi.ac.uk/pdbsum/2kyd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kyd ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kyd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kyd OCA], [https://pdbe.org/2kyd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kyd RCSB], [https://www.ebi.ac.uk/pdbsum/2kyd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kyd ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | Ribonucleic acid structure determination by NMR spectroscopy relies primarily on local structural restraints provided by (1)H- (1)H NOEs and J-couplings. When employed loosely, these restraints are broadly compatible with A- and B-like helical geometries and give rise to calculated structures that are highly sensitive to the force fields employed during refinement. A survey of recently reported NMR structures reveals significant variations in helical parameters, particularly the major groove width. Although helical parameters observed in high-resolution X-ray crystal structures of isolated A-form RNA helices are sensitive to crystal packing effects, variations among the published X-ray structures are significantly smaller than those observed in NMR structures. Here we show that restraints derived from aromatic (1)H- (13)C residual dipolar couplings (RDCs) and residual chemical shift anisotropies (RCSAs) can overcome NMR restraint and force field deficiencies and afford structures with helical properties similar to those observed in high-resolution X-ray structures. | ||
| - | |||
| - | Major groove width variations in RNA structures determined by NMR and impact of 13C residual chemical shift anisotropy and 1H-13C residual dipolar coupling on refinement.,Tolbert BS, Miyazaki Y, Barton S, Kinde B, Starck P, Singh R, Bax A, Case DA, Summers MF J Biomol NMR. 2010 Jul;47(3):205-19. Epub 2010 Jun 15. PMID:20549304<ref>PMID:20549304</ref> | ||
| - | |||
| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 2kyd" style="background-color:#fffaf0;"></div> | ||
| - | == References == | ||
| - | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
Current revision
RDC and RCSA refinement of an A-form RNA: Improvements in Major Groove Width
| |||||||||||
Categories: Large Structures | Barton S | Bax A | Case D | Kinde B | Miyazaki Y | Singh R | Stark P | Summers MF | Tolbert BS
