2rvc
From Proteopedia
(Difference between revisions)
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2rvc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Carassius_auratus Carassius auratus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RVC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RVC FirstGlance]. <br> | <table><tr><td colspan='2'>[[2rvc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Carassius_auratus Carassius auratus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RVC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RVC FirstGlance]. <br> | ||
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rvc OCA], [https://pdbe.org/2rvc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rvc RCSB], [https://www.ebi.ac.uk/pdbsum/2rvc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rvc ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rvc OCA], [https://pdbe.org/2rvc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rvc RCSB], [https://www.ebi.ac.uk/pdbsum/2rvc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rvc ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
[https://www.uniprot.org/uniprot/Q7T2M9_CARAU Q7T2M9_CARAU] | [https://www.uniprot.org/uniprot/Q7T2M9_CARAU Q7T2M9_CARAU] | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | Z-DNA binding proteins (ZBPs) play important roles in RNA editing, innate immune response and viral infection. Structural and biophysical studies show that ZBPs initially form an intermediate complex with B-DNA for B-Z conversion. However, a comprehensive understanding of the mechanism of Z-DNA binding and B-Z transition is still lacking, due to the absence of structural information on the intermediate complex. Here, we report the solution structure of the Zalpha domain of the ZBP-containing protein kinase from Carassius auratus (caZalphaPKZ). We quantitatively determined the binding affinity of caZalphaPKZ for both B-DNA and Z-DNA and characterized its B-Z transition activity, which is modulated by varying the salt concentration. Our results suggest that the intermediate complex formed by caZalphaPKZ and B-DNA can be used as molecular ruler, to measure the degree to which DNA transitions to the Z isoform. | ||
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- | Solution structure of the Z-DNA binding domain of PKR-like protein kinase from Carassius auratus and quantitative analyses of the intermediate complex during B-Z transition.,Lee AR, Park CJ, Cheong HK, Ryu KS, Park JW, Kwon MY, Lee J, Kim KK, Choi BS, Lee JH Nucleic Acids Res. 2016 Jan 20. pii: gkw025. PMID:26792893<ref>PMID:26792893</ref> | ||
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- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 2rvc" style="background-color:#fffaf0;"></div> | ||
- | == References == | ||
- | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> |
Current revision
Solution structure of Zalpha domain of goldfish ZBP-containing protein kinase
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Categories: Carassius auratus | Large Structures | Choi B | Choi Y | Kim K | Kwon M | Lee A | Lee J | Park C | Park J