5wox

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:28, 1 May 2024) (edit) (undo)
 
Line 1: Line 1:
==NMR solution structure of KanY protein (ms6282) using two 4D-spectra==
==NMR solution structure of KanY protein (ms6282) using two 4D-spectra==
-
<StructureSection load='5wox' size='340' side='right'caption='[[5wox]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
+
<StructureSection load='5wox' size='340' side='right'caption='[[5wox]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5wox]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WOX OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5WOX FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5wox]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycolicibacterium_smegmatis_MC2_155 Mycolicibacterium smegmatis MC2 155]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WOX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5WOX FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5wox FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wox OCA], [http://pdbe.org/5wox PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5wox RCSB], [http://www.ebi.ac.uk/pdbsum/5wox PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5wox ProSAT]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5wox FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wox OCA], [https://pdbe.org/5wox PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5wox RCSB], [https://www.ebi.ac.uk/pdbsum/5wox PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5wox ProSAT]</span></td></tr>
</table>
</table>
-
<div style="background-color:#fffaf0;">
+
== Function ==
-
== Publication Abstract from PubMed ==
+
[https://www.uniprot.org/uniprot/A0R5R3_MYCS2 A0R5R3_MYCS2]
-
Automated methods for NMR structure determination of proteins are continuously becoming more robust. However, current methods addressing larger, more complex targets rely on analyzing 6-10 complementary spectra, suggesting the need for alternative approaches. Here, we describe 4D-CHAINS/autoNOE-Rosetta, a complete pipeline for NOE-driven structure determination of medium- to larger-sized proteins. The 4D-CHAINS algorithm analyzes two 4D spectra recorded using a single, fully protonated protein sample in an iterative ansatz where common NOEs between different spin systems supplement conventional through-bond connectivities to establish assignments of sidechain and backbone resonances at high levels of completeness and with a minimum error rate. The 4D-CHAINS assignments are then used to guide automated assignment of long-range NOEs and structure refinement in autoNOE-Rosetta. Our results on four targets ranging in size from 15.5 to 27.3 kDa illustrate that the structures of proteins can be determined accurately and in an unsupervised manner in a matter of days.
+
-
 
+
-
Automated NMR resonance assignments and structure determination using a minimal set of 4D spectra.,Evangelidis T, Nerli S, Novacek J, Brereton AE, Karplus PA, Dotas RR, Venditti V, Sgourakis NG, Tripsianes K Nat Commun. 2018 Jan 26;9(1):384. doi: 10.1038/s41467-017-02592-z. PMID:29374165<ref>PMID:29374165</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 5wox" style="background-color:#fffaf0;"></div>
+
-
== References ==
+
-
<references/>
+
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Evangelidis, T]]
+
[[Category: Mycolicibacterium smegmatis MC2 155]]
-
[[Category: Nerli, S]]
+
[[Category: Evangelidis T]]
-
[[Category: Sgourakis, N G]]
+
[[Category: Nerli S]]
-
[[Category: Tripsianes, K]]
+
[[Category: Sgourakis NG]]
-
[[Category: Predicted polyketide cyclase/dehydratase]]
+
[[Category: Tripsianes K]]
-
[[Category: Unknown function]]
+

Current revision

NMR solution structure of KanY protein (ms6282) using two 4D-spectra

PDB ID 5wox

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5wox"
Personal tools