8ayv

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Current revision (07:57, 1 May 2024) (edit) (undo)
 
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== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[8ayv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida_KT2440 Pseudomonas putida KT2440]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8AYV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8AYV FirstGlance]. <br>
<table><tr><td colspan='2'>[[8ayv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida_KT2440 Pseudomonas putida KT2440]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8AYV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8AYV FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8ayv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8ayv OCA], [https://pdbe.org/8ayv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8ayv RCSB], [https://www.ebi.ac.uk/pdbsum/8ayv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8ayv ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.044&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8ayv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8ayv OCA], [https://pdbe.org/8ayv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8ayv RCSB], [https://www.ebi.ac.uk/pdbsum/8ayv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8ayv ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[https://www.uniprot.org/uniprot/Q88R72_PSEPK Q88R72_PSEPK]
[https://www.uniprot.org/uniprot/Q88R72_PSEPK Q88R72_PSEPK]
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Deciphering the mechanisms of bacterial fatty acid biosynthesis is crucial for both the engineering of bacterial hosts to produce fatty acid-derived molecules and the development of new antibiotics. However, gaps in our understanding of the initiation of fatty acid biosynthesis remain. Here, we demonstrate that the industrially relevant microbe Pseudomonas putida KT2440 contains three distinct pathways to initiate fatty acid biosynthesis. The first two routes employ conventional beta-ketoacyl-ACP synthase III enzymes, FabH1 and FabH2, that accept short- and medium-chain-length acyl-CoAs, respectively. The third route utilizes a malonyl-ACP decarboxylase enzyme, MadB. A combination of exhaustive in vivo alanine-scanning mutagenesis, in vitro biochemical characterization, X-ray crystallography, and computational modeling elucidate the presumptive mechanism of malonyl-ACP decarboxylation via MadB. Given that functional homologs of MadB are widespread throughout domain Bacteria, this ubiquitous alternative fatty acid initiation pathway provides new opportunities to target a range of biotechnology and biomedical applications.
 
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Initiation of fatty acid biosynthesis in Pseudomonas putida KT2440.,McNaught KJ, Kuatsjah E, Zahn M, Prates ET, Shao H, Bentley GJ, Pickford AR, Gruber JN, Hestmark KV, Jacobson DA, Poirier BC, Ling C, San Marchi M, Michener WE, Nicora CD, Sanders JN, Szostkiewicz CJ, Velickovic D, Zhou M, Munoz N, Kim YM, Magnuson JK, Burnum-Johnson KE, Houk KN, McGeehan JE, Johnson CW, Beckham GT Metab Eng. 2023 Feb 15;76:193-203. doi: 10.1016/j.ymben.2023.02.006. PMID:36796578<ref>PMID:36796578</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 8ayv" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>

Current revision

Crystal structure of the Malonyl-ACP Decarboxylase MadB from Pseudomonas putida

PDB ID 8ayv

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