1th5
From Proteopedia
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==Solution structure of C-terminal domain of NifU-like protein from Oryza sativa== | ==Solution structure of C-terminal domain of NifU-like protein from Oryza sativa== | ||
| - | <StructureSection load='1th5' size='340' side='right'caption='[[1th5 | + | <StructureSection load='1th5' size='340' side='right'caption='[[1th5]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1th5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[1th5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TH5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TH5 FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1th5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1th5 OCA], [https://pdbe.org/1th5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1th5 RCSB], [https://www.ebi.ac.uk/pdbsum/1th5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1th5 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1th5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1th5 OCA], [https://pdbe.org/1th5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1th5 RCSB], [https://www.ebi.ac.uk/pdbsum/1th5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1th5 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
| - | + | [https://www.uniprot.org/uniprot/NIFU1_ORYSJ NIFU1_ORYSJ] Molecular scaffold for [Fe-S] cluster assembly of chloroplastic iron-sulfur proteins (By similarity). | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1th5 ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1th5 ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | NifU-like proteins are a highly conserved protein that serves as the scaffold for assembly of Fe-S clusters. Chloroplastic NifU-like proteins have tandem NifU like domains, named domain I and domain II. Although the amino acid sequences of these domains are very similar to each other, the predicted functional region for the Fe-S cluster assembly, the CXXC motif, exists only in domain I. The structure of the domain II of chloroplastic NifU-like protein OsNifU1A has an alpha-beta sandwich structure containing two alpha helices located on one side of the beta-sheet. The electrostatic surface potential of OsNifU1A domain II is predominantly positively charged. Chloroplastic NifU-like proteins are targeted to ferredoxin for transferring the Fe-S cluster. The ferredoxin presents an overall negatively charged surface, which may evoke an electrostatic association with OsNifU1A domain II. | ||
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| - | The NMR structure of the domain II of a chloroplastic NifU-like protein OsNifU1A.,Kumeta H, Ogura K, Asayama M, Katoh S, Katoh E, Teshima K, Inagaki F J Biomol NMR. 2007 Jun;38(2):161-4. Epub 2007 Apr 13. PMID:17431550<ref>PMID:17431550</ref> | ||
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| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 1th5" style="background-color:#fffaf0;"></div> | ||
| - | == References == | ||
| - | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: | + | [[Category: Oryza sativa]] |
| - | [[Category: Asayama | + | [[Category: Asayama M]] |
| - | [[Category: Inagaki | + | [[Category: Inagaki F]] |
| - | [[Category: Katoh | + | [[Category: Katoh E]] |
| - | [[Category: Katoh | + | [[Category: Katoh S]] |
| - | [[Category: Kumeta | + | [[Category: Kumeta H]] |
| - | [[Category: Ogura | + | [[Category: Ogura K]] |
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Revision as of 08:41, 1 May 2024
Solution structure of C-terminal domain of NifU-like protein from Oryza sativa
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Categories: Large Structures | Oryza sativa | Asayama M | Inagaki F | Katoh E | Katoh S | Kumeta H | Ogura K
