2wll

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Current revision (10:13, 9 May 2024) (edit) (undo)
 
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<StructureSection load='2wll' size='340' side='right'caption='[[2wll]], [[Resolution|resolution]] 3.65&Aring;' scene=''>
<StructureSection load='2wll' size='340' side='right'caption='[[2wll]], [[Resolution|resolution]] 3.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2wll]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_pseudomallei"_whitmore_1913 "bacillus pseudomallei" whitmore 1913]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WLL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WLL FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2wll]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_pseudomallei Burkholderia pseudomallei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WLL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WLL FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PLC:DIUNDECYL+PHOSPHATIDYL+CHOLINE'>PLC</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.65&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1p7b|1p7b]], [[1xl4|1xl4]], [[2wln|2wln]], [[2wlo|2wlo]], [[2wli|2wli]], [[2wlm|2wlm]], [[1xl6|1xl6]], [[2wlh|2wlh]], [[2wlk|2wlk]], [[2wlj|2wlj]], [[2x6b|2x6b]], [[2x6a|2x6a]], [[2x6c|2x6c]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PLC:DIUNDECYL+PHOSPHATIDYL+CHOLINE'>PLC</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CHROMOSOME 1 KIRBAC1.1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=28450 "Bacillus pseudomallei" Whitmore 1913])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wll FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wll OCA], [https://pdbe.org/2wll PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wll RCSB], [https://www.ebi.ac.uk/pdbsum/2wll PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wll ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wll FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wll OCA], [https://pdbe.org/2wll PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wll RCSB], [https://www.ebi.ac.uk/pdbsum/2wll PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wll ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/P83698_BURPE P83698_BURPE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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The KirBac1.1 channel belongs to the inward-rectifier family of potassium channels. Here we report the structure of the entire prokaryotic Kir channel assembly, in the closed state, refined to a resolution of 3.65 angstroms. We identify the main activation gate and structural elements involved in gating. On the basis of structural evidence presented here, we suggest that gating involves coupling between the intracellular and membrane domains. This further suggests that initiation of gating by membrane or intracellular signals represents different entry points to a common mechanistic pathway.
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Potassium channels embedded in cell membranes employ gates to regulate K+ current. While a specific constriction in the permeation pathway has historically been implicated in gating, recent reports suggest that the signature ion selectivity filter located in the outer membrane leaflet may be equally important. Inwardly rectifying K+ channels also control the directionality of flow, using intracellular polyamines to stem ion efflux by a valve-like action. This study presents crystallographic evidence of interdependent gates in the conduction pathway and reveals the mechanism of polyamine block. Reorientation of the intracellular domains, concomitant with activation, instigates polyamine release from intracellular binding sites to block the permeation pathway. Conformational adjustments of the slide helices, achieved by rotation of the cytoplasmic assembly relative to the pore, are directly correlated to the ion configuration in the selectivity filter. Ion redistribution occurs irrespective of the constriction, suggesting a more expansive role of the selectivity filter in gating than previously appreciated.
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Crystal structure of the potassium channel KirBac1.1 in the closed state.,Kuo A, Gulbis JM, Antcliff JF, Rahman T, Lowe ED, Zimmer J, Cuthbertson J, Ashcroft FM, Ezaki T, Doyle DA Science. 2003 Jun 20;300(5627):1922-6. Epub 2003 May 8. PMID:12738871<ref>PMID:12738871</ref>
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Domain reorientation and rotation of an intracellular assembly regulate conduction in Kir potassium channels.,Clarke OB, Caputo AT, Hill AP, Vandenberg JI, Smith BJ, Gulbis JM Cell. 2010 Jun 11;141(6):1018-29. PMID:20564790<ref>PMID:20564790</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bacillus pseudomallei whitmore 1913]]
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[[Category: Burkholderia pseudomallei]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Caputo, A T]]
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[[Category: Caputo AT]]
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[[Category: Clarke, O B]]
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[[Category: Clarke OB]]
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[[Category: Gulbis, J M]]
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[[Category: Gulbis JM]]
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[[Category: Hill, A P]]
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[[Category: Hill AP]]
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[[Category: Smith, B J]]
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[[Category: Smith BJ]]
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[[Category: VandenBerg, J I]]
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[[Category: VandenBerg JI]]
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[[Category: Cytosolic assembly]]
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[[Category: Immunoglobulin fold]]
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[[Category: Inward rectifier]]
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[[Category: Ion conduction]]
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[[Category: Ionic channel]]
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[[Category: K+ channel]]
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[[Category: Kir channel]]
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[[Category: Kirbac]]
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[[Category: Metal transport]]
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[[Category: Potassium channel]]
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[[Category: Transmembrane helice]]
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Current revision

POTASSIUM CHANNEL FROM BURKHOLDERIA PSEUDOMALLEI

PDB ID 2wll

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