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| | <StructureSection load='4am6' size='340' side='right'caption='[[4am6]], [[Resolution|resolution]] 2.70Å' scene=''> | | <StructureSection load='4am6' size='340' side='right'caption='[[4am6]], [[Resolution|resolution]] 2.70Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4am6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AM6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4AM6 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4am6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AM6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4AM6 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[4am7|4am7]]</div></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4am6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4am6 OCA], [https://pdbe.org/4am6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4am6 RCSB], [https://www.ebi.ac.uk/pdbsum/4am6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4am6 ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4am6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4am6 OCA], [https://pdbe.org/4am6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4am6 RCSB], [https://www.ebi.ac.uk/pdbsum/4am6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4am6 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[https://www.uniprot.org/uniprot/ARP8_YEAST ARP8_YEAST]] Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Exhibits low basal ATPase activity, and unable to polymerize. Strongly prefer nucleosomes and H3-H4 tetramers over H2A-H2B dimers, suggesting it may act as a nucleosome recognition module within the complex.<ref>PMID:23213201</ref>
| + | [https://www.uniprot.org/uniprot/ARP8_YEAST ARP8_YEAST] Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Exhibits low basal ATPase activity, and unable to polymerize. Strongly prefer nucleosomes and H3-H4 tetramers over H2A-H2B dimers, suggesting it may act as a nucleosome recognition module within the complex.<ref>PMID:23213201</ref> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Atcc 18824]] | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Bose, D]] | + | [[Category: Saccharomyces cerevisiae]] |
| - | [[Category: Cook, N J]] | + | [[Category: Bose D]] |
| - | [[Category: Saravanan, M]] | + | [[Category: Cook NJ]] |
| - | [[Category: Wigley, D B]] | + | [[Category: Saravanan M]] |
| - | [[Category: Wuerges, J]] | + | [[Category: Wigley DB]] |
| - | [[Category: Zhang, X]] | + | [[Category: Wuerges J]] |
| - | [[Category: Atp-binding protein]]
| + | [[Category: Zhang X]] |
| - | [[Category: Chromatin remodelling complex]]
| + | |
| - | [[Category: Dna repair]]
| + | |
| - | [[Category: Nuclear actin-related protein]]
| + | |
| - | [[Category: Nuclear protein]]
| + | |
| - | [[Category: Transcription regulation]]
| + | |
| Structural highlights
Function
ARP8_YEAST Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Exhibits low basal ATPase activity, and unable to polymerize. Strongly prefer nucleosomes and H3-H4 tetramers over H2A-H2B dimers, suggesting it may act as a nucleosome recognition module within the complex.[1]
Publication Abstract from PubMed
Actin-related protein Arp8 is a component of the INO80 chromatin remodeling complex. Yeast Arp8 (yArp8) comprises two domains: a 25-KDa N-terminal domain, found only in yeast, and a 75-KDa C-terminal domain (yArp8CTD) that contains the actin fold and is conserved across other species. The crystal structure shows that yArp8CTD contains three insertions within the actin core. Using a combination of biochemistry and EM, we show that Arp8 forms a complex with nucleosomes, and that the principal interactions are via the H3 and H4 histones, mediated through one of the yArp8 insertions. We show that recombinant yArp8 exists in monomeric and dimeric states, but the dimer is the biologically relevant form required for stable interactions with histones that exploits the twofold symmetry of the nucleosome core. Taken together, these data provide unique insight into the stoichiometry, architecture, and molecular interactions between components of the INO80 remodeling complex and nucleosomes, providing a first step toward building up the structure of the complex.
Interactions between the nucleosome histone core and Arp8 in the INO80 chromatin remodeling complex.,Saravanan M, Wuerges J, Bose D, McCormack EA, Cook NJ, Zhang X, Wigley DB Proc Natl Acad Sci U S A. 2012 Dec 18;109(51):20883-8. doi:, 10.1073/pnas.1214735109. Epub 2012 Dec 3. PMID:23213201[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Saravanan M, Wuerges J, Bose D, McCormack EA, Cook NJ, Zhang X, Wigley DB. Interactions between the nucleosome histone core and Arp8 in the INO80 chromatin remodeling complex. Proc Natl Acad Sci U S A. 2012 Dec 18;109(51):20883-8. doi:, 10.1073/pnas.1214735109. Epub 2012 Dec 3. PMID:23213201 doi:http://dx.doi.org/10.1073/pnas.1214735109
- ↑ Saravanan M, Wuerges J, Bose D, McCormack EA, Cook NJ, Zhang X, Wigley DB. Interactions between the nucleosome histone core and Arp8 in the INO80 chromatin remodeling complex. Proc Natl Acad Sci U S A. 2012 Dec 18;109(51):20883-8. doi:, 10.1073/pnas.1214735109. Epub 2012 Dec 3. PMID:23213201 doi:http://dx.doi.org/10.1073/pnas.1214735109
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