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| ==Complex between the Haloferax volcanii Trm112 methyltransferase activator and the Hvo_0019 putative methyltransferase== | | ==Complex between the Haloferax volcanii Trm112 methyltransferase activator and the Hvo_0019 putative methyltransferase== |
- | <StructureSection load='6f5z' size='340' side='right' caption='[[6f5z]], [[Resolution|resolution]] 1.35Å' scene=''> | + | <StructureSection load='6f5z' size='340' side='right'caption='[[6f5z]], [[Resolution|resolution]] 1.35Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6f5z]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Halvd Halvd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6F5Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6F5Z FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6f5z]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Haloferax_volcanii_DS2 Haloferax volcanii DS2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6F5Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6F5Z FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">C498_18333 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=309800 HALVD]), HVO_1131 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=309800 HALVD])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6f5z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6f5z OCA], [http://pdbe.org/6f5z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6f5z RCSB], [http://www.ebi.ac.uk/pdbsum/6f5z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6f5z ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6f5z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6f5z OCA], [https://pdbe.org/6f5z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6f5z RCSB], [https://www.ebi.ac.uk/pdbsum/6f5z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6f5z ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/D4GYL4_HALVD D4GYL4_HALVD] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Halvd]] | + | [[Category: Haloferax volcanii DS2]] |
- | [[Category: Graille, M]] | + | [[Category: Large Structures]] |
- | [[Category: Tran, N van]] | + | [[Category: Graille M]] |
- | [[Category: Archaea]] | + | [[Category: Van Tran N]] |
- | [[Category: Halophile]]
| + | |
- | [[Category: Holoenzyme]]
| + | |
- | [[Category: Methyltransferase]]
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- | [[Category: Protein complex]]
| + | |
- | [[Category: Transferase]]
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| Structural highlights
Function
D4GYL4_HALVD
Publication Abstract from PubMed
Protein synthesis is a complex and highly coordinated process requiring many different protein factors as well as various types of nucleic acids. All translation machinery components require multiple maturation events to be functional. These include post-transcriptional and post-translational modification steps and methylations are the most frequent among these events. In eukaryotes, Trm112, a small protein (COG2835) conserved in all three domains of life, interacts and activates four methyltransferases (Bud23, Trm9, Trm11 and Mtq2) that target different components of the translation machinery (rRNA, tRNAs, release factors). To clarify the function of Trm112 in archaea, we have characterized functionally and structurally its interaction network using Haloferax volcanii as model system. This led us to unravel that methyltransferases are also privileged Trm112 partners in archaea and that this Trm112 network is much more complex than anticipated from eukaryotic studies. Interestingly, among the identified enzymes, some are functionally orthologous to eukaryotic Trm112 partners, emphasizing again the similarity between eukaryotic and archaeal translation machineries. Other partners display some similarities with bacterial methyltransferases, suggesting that Trm112 is a general partner for methyltransferases in all living organisms.
Evolutionary insights into Trm112-methyltransferase holoenzymes involved in translation between archaea and eukaryotes.,van Tran N, Muller L, Ross RL, Lestini R, Letoquart J, Ulryck N, Limbach PA, de Crecy-Lagard V, Cianferani S, Graille M Nucleic Acids Res. 2018 Jul 13. pii: 5053166. doi: 10.1093/nar/gky638. PMID:30010922[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ van Tran N, Muller L, Ross RL, Lestini R, Letoquart J, Ulryck N, Limbach PA, de Crecy-Lagard V, Cianferani S, Graille M. Evolutionary insights into Trm112-methyltransferase holoenzymes involved in translation between archaea and eukaryotes. Nucleic Acids Res. 2018 Jul 13. pii: 5053166. doi: 10.1093/nar/gky638. PMID:30010922 doi:http://dx.doi.org/10.1093/nar/gky638
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