|
|
Line 1: |
Line 1: |
| | | |
| ==The crystal structure of EncM complexed with dioxygen under 5 bar of oxygen pressure.== | | ==The crystal structure of EncM complexed with dioxygen under 5 bar of oxygen pressure.== |
- | <StructureSection load='6fp3' size='340' side='right' caption='[[6fp3]], [[Resolution|resolution]] 1.98Å' scene=''> | + | <StructureSection load='6fp3' size='340' side='right'caption='[[6fp3]], [[Resolution|resolution]] 1.98Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6fp3]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/'streptomyces_maritimus' 'streptomyces maritimus']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FP3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FP3 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6fp3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_maritimus Streptomyces maritimus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FP3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6FP3 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.976Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6foq|6foq]], [[6fow|6fow]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">encM ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=115828 'Streptomyces maritimus'])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6fp3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fp3 OCA], [https://pdbe.org/6fp3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6fp3 RCSB], [https://www.ebi.ac.uk/pdbsum/6fp3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6fp3 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6fp3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fp3 OCA], [http://pdbe.org/6fp3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6fp3 RCSB], [http://www.ebi.ac.uk/pdbsum/6fp3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6fp3 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q9KHK2_9ACTN Q9KHK2_9ACTN] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
Line 22: |
Line 23: |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
| + | [[Category: Large Structures]] |
| [[Category: Streptomyces maritimus]] | | [[Category: Streptomyces maritimus]] |
- | [[Category: Saleem-Batcha, R]] | + | [[Category: Saleem-Batcha R]] |
- | [[Category: Teufel, R]] | + | [[Category: Teufel R]] |
- | [[Category: Encm]]
| + | |
- | [[Category: Fad]]
| + | |
- | [[Category: Flavin-n5-oxide]]
| + | |
- | [[Category: Flavoprotein]]
| + | |
- | [[Category: Nooxygenase]]
| + | |
- | [[Category: Oxygen binding]]
| + | |
- | [[Category: Oxygenating species]]
| + | |
| Structural highlights
Function
Q9KHK2_9ACTN
Publication Abstract from PubMed
The reactions of enzymes and cofactors with gaseous molecules such as dioxygen (O2) are challenging to study and remain among the most contentious subjects in biochemistry. To date, it is largely enigmatic how enzymes control and fine-tune their reactions with O2, as exemplified by the ubiquitous flavin-dependent enzymes that commonly facilitate redox chemistry such as the oxygenation of organic substrates. Here we employ O2-pressurized X-ray crystallography and quantum mechanical calculations to reveal how the precise positioning of O2 within a flavoenzyme's active site enables the regiospecific formation of a covalent flavin-oxygen adduct and oxygenating species (i.e., the flavin-N5-oxide) by mimicking a critical transition state. This study unambiguously demonstrates how enzymes may control the O2 functionalization of an organic cofactor as prerequisite for oxidative catalysis. Our work thus illustrates how O2 reactivity can be harnessed in an enzymatic environment and provides crucial knowledge for future rational design of O2-reactive enzymes.
Enzymatic control of dioxygen binding and functionalization of the flavin cofactor.,Saleem-Batcha R, Stull F, Sanders JN, Moore BS, Palfey BA, Houk KN, Teufel R Proc Natl Acad Sci U S A. 2018 Apr 23. pii: 1801189115. doi:, 10.1073/pnas.1801189115. PMID:29686059[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Saleem-Batcha R, Stull F, Sanders JN, Moore BS, Palfey BA, Houk KN, Teufel R. Enzymatic control of dioxygen binding and functionalization of the flavin cofactor. Proc Natl Acad Sci U S A. 2018 Apr 23. pii: 1801189115. doi:, 10.1073/pnas.1801189115. PMID:29686059 doi:http://dx.doi.org/10.1073/pnas.1801189115
|