2mph
From Proteopedia
(Difference between revisions)
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2mph]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MPH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MPH FirstGlance]. <br> | <table><tr><td colspan='2'>[[2mph]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MPH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MPH FirstGlance]. <br> | ||
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mph FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mph OCA], [https://pdbe.org/2mph PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mph RCSB], [https://www.ebi.ac.uk/pdbsum/2mph PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mph ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mph FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mph OCA], [https://pdbe.org/2mph PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mph RCSB], [https://www.ebi.ac.uk/pdbsum/2mph PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mph ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
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The nuclear immunophilin FKBP25 interacts with chromatin-related proteins and transcription factors and is suggested to interact with nucleic acids. Currently the structural basis of nucleic acid binding by FKBP25 is unknown. Here we determined the nuclear magnetic resonance (NMR) solution structure of full-length human FKBP25 and studied its interaction with DNA. The FKBP25 structure revealed that the N-terminal helix-loop-helix (HLH) domain and C-terminal FK506-binding domain (FKBD) interact with each other and that both of the domains are involved in DNA binding. The HLH domain forms major-groove interactions and the basic FKBD loop cooperates to form interactions with an adjacent minor-groove of DNA. The FKBP25-DNA complex model, supported by NMR and mutational studies, provides structural and mechanistic insights into the nuclear immunophilin-mediated nucleic acid recognition. | The nuclear immunophilin FKBP25 interacts with chromatin-related proteins and transcription factors and is suggested to interact with nucleic acids. Currently the structural basis of nucleic acid binding by FKBP25 is unknown. Here we determined the nuclear magnetic resonance (NMR) solution structure of full-length human FKBP25 and studied its interaction with DNA. The FKBP25 structure revealed that the N-terminal helix-loop-helix (HLH) domain and C-terminal FK506-binding domain (FKBD) interact with each other and that both of the domains are involved in DNA binding. The HLH domain forms major-groove interactions and the basic FKBD loop cooperates to form interactions with an adjacent minor-groove of DNA. The FKBP25-DNA complex model, supported by NMR and mutational studies, provides structural and mechanistic insights into the nuclear immunophilin-mediated nucleic acid recognition. | ||
| - | Structural basis of nucleic acid recognition by FK506-binding protein 25 (FKBP25), a nuclear immunophilin.,Prakash A, Shin J, Rajan S, Yoon HS Nucleic Acids Res. 2016 Apr 7;44(6):2909-25. doi: 10.1093/nar/gkw001. Epub 2016, Jan 13. PMID:26762975<ref>PMID:26762975</ref> | + | Structural basis of nucleic acid recognition by FK506-binding protein 25 (FKBP25), a nuclear immunophilin.,Prakash A, Shin J, Rajan S, Yoon HS Nucleic Acids Res. 2016 Apr 7;44(6):2909-25. doi: 10.1093/nar/gkw001. Epub 2016 , Jan 13. PMID:26762975<ref>PMID:26762975</ref> |
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
Current revision
Solution Structure of human FK506 binding Protein 25
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