1y6m

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='1y6m' size='340' side='right'caption='[[1y6m]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
<StructureSection load='1y6m' size='340' side='right'caption='[[1y6m]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1y6m]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ebvg Ebvg] and [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y6M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y6M FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1y6m]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Human_gammaherpesvirus_4 Human gammaherpesvirus 4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y6M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y6M FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1y6k|1y6k]], [[1j7v|1j7v]], [[1y6n|1y6n]]</div></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BCRF1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10376 EBVG]), IL10RA, IL10R ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y6m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y6m OCA], [https://pdbe.org/1y6m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y6m RCSB], [https://www.ebi.ac.uk/pdbsum/1y6m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y6m ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y6m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y6m OCA], [https://pdbe.org/1y6m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y6m RCSB], [https://www.ebi.ac.uk/pdbsum/1y6m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y6m ProSAT]</span></td></tr>
</table>
</table>
-
== Disease ==
 
-
[[https://www.uniprot.org/uniprot/I10R1_HUMAN I10R1_HUMAN]] Defects in IL10RA are the cause of inflammatory bowel disease type 28 (IBD28) [MIM:[https://omim.org/entry/613148 613148]]. It is a chronic, relapsing inflammation of the gastrointestinal tract with a complex etiology. It is subdivided into Crohn disease and ulcerative colitis phenotypes. Crohn disease may affect any part of the gastrointestinal tract from the mouth to the anus, but most frequently it involves the terminal ileum and colon. Bowel inflammation is transmural and discontinuous; it may contain granulomas or be associated with intestinal or perianal fistulas. In contrast, in ulcerative colitis, the inflammation is continuous and limited to rectal and colonic mucosal layers; fistulas and granulomas are not observed. Both diseases include extraintestinal inflammation of the skin, eyes, or joints.<ref>PMID:19890111</ref>
 
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/IL10H_EBVB9 IL10H_EBVB9]] Plays a role in masking infected cells for immune recognition by cytotoxic T-lymphocytes. Down-regulates the expression of the host TAP1 gene (transporter associated with antigen processing), thereby affecting the transport of peptides into the endoplasmic reticulum and subsequent peptide loading by MHC class I molecules. Inhibits IFN-gamma synthesis.<ref>PMID:2161559</ref> <ref>PMID:9310490</ref> [[https://www.uniprot.org/uniprot/I10R1_HUMAN I10R1_HUMAN]] Receptor for IL10; binds IL10 with a high affinity.
+
[https://www.uniprot.org/uniprot/IL10H_EBVB9 IL10H_EBVB9] Plays a role in masking infected cells for immune recognition by cytotoxic T-lymphocytes. Down-regulates the expression of the host TAP1 gene (transporter associated with antigen processing), thereby affecting the transport of peptides into the endoplasmic reticulum and subsequent peptide loading by MHC class I molecules. Inhibits IFN-gamma synthesis.<ref>PMID:2161559</ref> <ref>PMID:9310490</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 39: Line 36:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Ebvg]]
+
[[Category: Homo sapiens]]
-
[[Category: Human]]
+
[[Category: Human gammaherpesvirus 4]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Jones, B C]]
+
[[Category: Jones BC]]
-
[[Category: Logsdon, N J]]
+
[[Category: Logsdon NJ]]
-
[[Category: Walter, M R]]
+
[[Category: Walter MR]]
-
[[Category: Yoon, S I]]
+
[[Category: Yoon SI]]
-
[[Category: Helix bundle]]
+
-
[[Category: Immune system]]
+
-
[[Category: Receptor complex]]
+

Revision as of 08:00, 15 May 2024

Crystal structure of Epstein-Barr virus IL-10 complexed with the soluble IL-10R1 chain

PDB ID 1y6m

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1y6m"
Personal tools