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| ==NMR structure of the gpu tail protein from lambda bacteriophage== | | ==NMR structure of the gpu tail protein from lambda bacteriophage== |
- | <StructureSection load='1z1z' size='340' side='right'caption='[[1z1z]], [[NMR_Ensembles_of_Models | 1 NMR models]]' scene=''> | + | <StructureSection load='1z1z' size='340' side='right'caption='[[1z1z]]' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[1z1z]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteriophage_lambda Bacteriophage lambda]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z1Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Z1Z FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1z1z]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_Lambda Escherichia virus Lambda]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z1Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Z1Z FirstGlance]. <br> |
- | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1in0|1in0]]</div></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">gpu ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10710 Bacteriophage lambda])</td></tr>
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| <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1z1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z1z OCA], [https://pdbe.org/1z1z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1z1z RCSB], [https://www.ebi.ac.uk/pdbsum/1z1z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1z1z ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1z1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z1z OCA], [https://pdbe.org/1z1z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1z1z RCSB], [https://www.ebi.ac.uk/pdbsum/1z1z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1z1z ProSAT]</span></td></tr> |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[https://www.uniprot.org/uniprot/VMTU_LAMBD VMTU_LAMBD]] Gene U protein is a minor tail component, located at the proximal end; in conjunction with protein Z, it is involved in the termination of tail-tube polymerization.
| + | [https://www.uniprot.org/uniprot/TTTP_LAMBD TTTP_LAMBD] Plays an essential role in tail assembly by capping the rapidly polymerizing tail once it has reached its requisite length and serving as the interaction surface for the completion protein.<ref>PMID:2150582</ref> |
| == Evolutionary Conservation == | | == Evolutionary Conservation == |
| [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Bacteriophage lambda]] | + | [[Category: Escherichia virus Lambda]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Davidson, A]] | + | [[Category: Davidson A]] |
- | [[Category: Donaldson, L W]] | + | [[Category: Donaldson LW]] |
- | [[Category: Edmonds, L]] | + | [[Category: Edmonds L]] |
- | [[Category: Maxwell, K]] | + | [[Category: Maxwell K]] |
- | [[Category: Bacteriophage]]
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- | [[Category: Mixed alpha-beta]]
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- | [[Category: Tail protein]]
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- | [[Category: Viral protein]]
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| Structural highlights
Function
TTTP_LAMBD Plays an essential role in tail assembly by capping the rapidly polymerizing tail once it has reached its requisite length and serving as the interaction surface for the completion protein.[1]
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
During the late stages of lambda bacteriophage assembly, the protein gpU terminates tail polymerization and participates at the interface between the mature capsid and tail components. When it engages the lambda tail, gpU undergoes a monomer-hexamer transition to achieve its biologically active form. Towards understanding how gpU participates in multiple protein-protein interactions, we have solved the structure of gpU in its monomeric state using NMR methods. The structure reveals a mixed alpha/beta motif with several dynamic loops at the periphery. Addition of 20 mM MgCl(2) is known to oligomerize gpU in the absence of its protein partners. Multiple image analysis of electron micrographs revealed ring-like structures of magnesium ion saturated gpU with a 30 A pore, consistent with its function as a portal for the passage of viral DNA into the host bacterium. The ability of magnesium ions to promote oligomerization was lost when substitutions were made at a cluster of acidic amino acids in the vicinity of helix alpha2 and the beta1-beta2 loop. Furthermore, substitutions at these sites abolished the biological activity of gpU.
The NMR structure of the gpU tail-terminator protein from bacteriophage lambda: identification of sites contributing to Mg(II)-mediated oligomerization and biological function.,Edmonds L, Liu A, Kwan JJ, Avanessy A, Caracoglia M, Yang I, Maxwell KL, Rubenstein J, Davidson AR, Donaldson LW J Mol Biol. 2007 Jan 5;365(1):175-86. Epub 2006 Sep 29. PMID:17056065[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Katsura I. Mechanism of length determination in bacteriophage lambda tails. Adv Biophys. 1990;26:1-18. doi: 10.1016/0065-227x(90)90004-d. PMID:2150582 doi:http://dx.doi.org/10.1016/0065-227x(90)90004-d
- ↑ Edmonds L, Liu A, Kwan JJ, Avanessy A, Caracoglia M, Yang I, Maxwell KL, Rubenstein J, Davidson AR, Donaldson LW. The NMR structure of the gpU tail-terminator protein from bacteriophage lambda: identification of sites contributing to Mg(II)-mediated oligomerization and biological function. J Mol Biol. 2007 Jan 5;365(1):175-86. Epub 2006 Sep 29. PMID:17056065 doi:10.1016/j.jmb.2006.09.068
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