We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

5xvo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:06, 22 May 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5xvo' size='340' side='right'caption='[[5xvo]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
<StructureSection load='5xvo' size='340' side='right'caption='[[5xvo]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5xvo]] is a 18 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis_tx0027 Enterococcus faecalis tx0027]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XVO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5XVO FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5xvo]] is a 18 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_faecalis_TX0027 Enterococcus faecalis TX0027]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XVO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XVO FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5xvn|5xvn]], [[5xvp|5xvp]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cas1, HMPREF9501_02814 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=749498 Enterococcus faecalis TX0027]), cas2, HMPREF9501_02813 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=749498 Enterococcus faecalis TX0027])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xvo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xvo OCA], [https://pdbe.org/5xvo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xvo RCSB], [https://www.ebi.ac.uk/pdbsum/5xvo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xvo ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5xvo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xvo OCA], [http://pdbe.org/5xvo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xvo RCSB], [http://www.ebi.ac.uk/pdbsum/5xvo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xvo ProSAT]</span></td></tr>
+
</table>
</table>
-
== Function ==
 
-
[[http://www.uniprot.org/uniprot/E6GPD7_ENTFL E6GPD7_ENTFL]] CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.[HAMAP-Rule:MF_01470] [[http://www.uniprot.org/uniprot/E6GPD6_ENTFL E6GPD6_ENTFL]] CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.[HAMAP-Rule:MF_01471]
 
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 27: Line 24:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Enterococcus faecalis tx0027]]
+
[[Category: Enterococcus faecalis TX0027]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Ke, A]]
+
[[Category: Ke A]]
-
[[Category: Nam, K H]]
+
[[Category: Nam KH]]
-
[[Category: Ng, S]]
+
[[Category: Ng S]]
-
[[Category: Xiao, Y]]
+
[[Category: Xiao Y]]
-
[[Category: Ca]]
+
-
[[Category: Crispr]]
+
-
[[Category: Immune system]]
+

Current revision

E. fae Cas1-Cas2/prespacer/target ternary complex revealing DNA sampling and half-integration states

PDB ID 5xvo

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5xvo"
Personal tools