This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6rdi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:10, 22 May 2024) (edit) (undo)
 
Line 3: Line 3:
<SX load='6rdi' size='340' side='right' viewer='molstar' caption='[[6rdi]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
<SX load='6rdi' size='340' side='right' viewer='molstar' caption='[[6rdi]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6rdi]] is a 30 chain structure with sequence from [http://en.wikipedia.org/wiki/Polytomella_sp._pringsheim_198.80 Polytomella sp. pringsheim 198.80]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RDI OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6RDI FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6rdi]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Polytomella_sp._Pringsheim_198.80 Polytomella sp. Pringsheim 198.80]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RDI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6RDI FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=7.1.2.2 7.1.2.2] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6rdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rdi OCA], [http://pdbe.org/6rdi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rdi RCSB], [http://www.ebi.ac.uk/pdbsum/6rdi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rdi ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6rdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rdi OCA], [https://pdbe.org/6rdi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6rdi RCSB], [https://www.ebi.ac.uk/pdbsum/6rdi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6rdi ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/A0ZW40_9CHLO A0ZW40_9CHLO]] Produces ATP from ADP in the presence of a proton gradient across the membrane.[RuleBase:RU003551] [[http://www.uniprot.org/uniprot/A0ZW41_9CHLO A0ZW41_9CHLO]] Produces ATP from ADP in the presence of a proton gradient across the membrane.[RuleBase:RU003553]
+
[https://www.uniprot.org/uniprot/A0A5H1ZR95_9CHLO A0A5H1ZR95_9CHLO]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 6rdi" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6rdi" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[ATPase 3D structures|ATPase 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 24: Line 27:
</SX>
</SX>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Polytomella sp. pringsheim 198 80]]
+
[[Category: Polytomella sp. Pringsheim 198 80]]
-
[[Category: Klusch, N]]
+
[[Category: Klusch N]]
-
[[Category: Kuhlbrandt, W]]
+
[[Category: Kuhlbrandt W]]
-
[[Category: Murphy, B J]]
+
[[Category: Murphy BJ]]
-
[[Category: Yildiz, O]]
+
[[Category: Yildiz O]]
-
[[Category: Mitochondrial atp synthase dimer flexible coupling cryoem]]
+
-
[[Category: Proton transport]]
+

Current revision

Cryo-EM structure of Polytomella F-ATP synthase, Rotary substate 1A, monomer-masked refinement

6rdi, resolution 3.20Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6rdi"
Personal tools