2dmw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:44, 29 May 2024) (edit) (undo)
 
Line 1: Line 1:
==Solution structure of the LONGIN domain of Synaptobrevin-like protein 1==
==Solution structure of the LONGIN domain of Synaptobrevin-like protein 1==
-
<StructureSection load='2dmw' size='340' side='right'caption='[[2dmw]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+
<StructureSection load='2dmw' size='340' side='right'caption='[[2dmw]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2dmw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DMW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DMW FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2dmw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DMW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DMW FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SYBL1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dmw OCA], [https://pdbe.org/2dmw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dmw RCSB], [https://www.ebi.ac.uk/pdbsum/2dmw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dmw ProSAT], [https://www.topsan.org/Proteins/RSGI/2dmw TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dmw OCA], [https://pdbe.org/2dmw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dmw RCSB], [https://www.ebi.ac.uk/pdbsum/2dmw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dmw ProSAT], [https://www.topsan.org/Proteins/RSGI/2dmw TOPSAN]</span></td></tr>
</table>
</table>
 +
== Disease ==
 +
[https://www.uniprot.org/uniprot/VAMP7_HUMAN VAMP7_HUMAN] 46,XY partial gonadal dysgenesis.
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/VAMP7_HUMAN VAMP7_HUMAN] Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for heterotypic fusion of late endosomes with lysosomes and homotypic lysosomal fusion. Required for calcium regulated lysosomal exocytosis. Involved in the export of chylomicrons from the endoplasmic reticulum to the cis Golgi. Required for exocytosis of mediators during eosinophil and neutrophil degranulation, and target cell killing by natural killer cells. Required for focal exocytosis of late endocytic vesicles during phagosome formation.<ref>PMID:10888671</ref> <ref>PMID:16677249</ref> <ref>PMID:18042464</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 17: Line 21:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dmw ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dmw ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Inoue, M]]
+
[[Category: Inoue M]]
-
[[Category: Kigawa, T]]
+
[[Category: Kigawa T]]
-
[[Category: Koshiba, S]]
+
[[Category: Koshiba S]]
-
[[Category: Ohnishi, S]]
+
[[Category: Ohnishi S]]
-
[[Category: Structural genomic]]
+
[[Category: Sato M]]
-
[[Category: Sato, M]]
+
[[Category: Yokoyama S]]
-
[[Category: Yokoyama, S]]
+
-
[[Category: Longin domain]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: National project on protein structural and functional analyse]]
+
-
[[Category: Nppsfa]]
+
-
[[Category: Rsgi]]
+

Current revision

Solution structure of the LONGIN domain of Synaptobrevin-like protein 1

PDB ID 2dmw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools