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| <StructureSection load='2zw0' size='340' side='right'caption='[[2zw0]], [[Resolution|resolution]] 1.40Å' scene=''> | | <StructureSection load='2zw0' size='340' side='right'caption='[[2zw0]], [[Resolution|resolution]] 1.40Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[2zw0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"diplococcus_magnus"_prevot_1933 "diplococcus magnus" prevot 1933]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZW0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZW0 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2zw0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Finegoldia_magna Finegoldia magna]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZW0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZW0 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2zw1|2zw1]]</div></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zw0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zw0 OCA], [https://pdbe.org/2zw0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zw0 RCSB], [https://www.ebi.ac.uk/pdbsum/2zw0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zw0 ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zw0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zw0 OCA], [https://pdbe.org/2zw0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zw0 RCSB], [https://www.ebi.ac.uk/pdbsum/2zw0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zw0 ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q53291_FINMA Q53291_FINMA] |
| == Evolutionary Conservation == | | == Evolutionary Conservation == |
| [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Diplococcus magnus prevot 1933]] | + | [[Category: Finegoldia magna]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Honda, S]] | + | [[Category: Honda S]] |
- | [[Category: Matsumaru, H]] | + | [[Category: Matsumaru H]] |
- | [[Category: Odahara, T]] | + | [[Category: Odahara T]] |
- | [[Category: Suto, K]] | + | [[Category: Suto K]] |
- | [[Category: Watanabe, H]] | + | [[Category: Watanabe H]] |
- | [[Category: Immune system]]
| + | |
- | [[Category: Immunoglobulin binding domain]]
| + | |
- | [[Category: Ph-dependent ligand binding]]
| + | |
| Structural highlights
Function
Q53291_FINMA
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Protein-protein interaction in response to environmental conditions enables sophisticated biological and biotechnological processes. Aiming toward the rational design of a pH-sensitive protein-protein interaction, we engineered pH-sensitive mutants of streptococcal protein G B1, a binder to the IgG constant region. We systematically introduced histidine residues into the binding interface to cause electrostatic repulsion on the basis of a rigid body model. Exquisite pH sensitivity of this interaction was confirmed by surface plasmon resonance and affinity chromatography employing a clinically used human IgG. The pH-sensitive mechanism of the interaction was analyzed and evaluated from kinetic, thermodynamic, and structural viewpoints. Histidine-mediated electrostatic repulsion resulted in significant loss of exothermic heat of the binding that decreased the affinity only at acidic conditions, thereby improving the pH sensitivity. The reduced binding energy was partly recovered by "enthalpy-entropy compensation." Crystal structures of the designed mutants confirmed the validity of the rigid body model on which the effective electrostatic repulsion was based. Moreover, our data suggested that the entropy gain involved exclusion of water molecules solvated in a space formed by the introduced histidine and adjacent tryptophan residue. Our findings concerning the mechanism of histidine-introduced interactions will provide a guideline for the rational design of pH-sensitive protein-protein recognition.
Optimizing pH response of affinity between protein G and IgG Fc: how electrostatic modulations affect protein-protein interactions.,Watanabe H, Matsumaru H, Ooishi A, Feng Y, Odahara T, Suto K, Honda S J Biol Chem. 2009 May 1;284(18):12373-83. Epub 2009 Mar 6. PMID:19269963[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Watanabe H, Matsumaru H, Ooishi A, Feng Y, Odahara T, Suto K, Honda S. Optimizing pH response of affinity between protein G and IgG Fc: how electrostatic modulations affect protein-protein interactions. J Biol Chem. 2009 May 1;284(18):12373-83. Epub 2009 Mar 6. PMID:19269963 doi:http://dx.doi.org/10.1074/jbc.M809236200
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