3x0u
From Proteopedia
(Difference between revisions)
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==Crystal structure of PirB== | ==Crystal structure of PirB== | ||
- | <StructureSection load='3x0u' size='340' side='right'caption='[[3x0u]]' scene=''> | + | <StructureSection load='3x0u' size='340' side='right'caption='[[3x0u]], [[Resolution|resolution]] 1.70Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3X0U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3X0U FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3x0u]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_M0605 Vibrio parahaemolyticus M0605]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3X0U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3X0U FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3x0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3x0u OCA], [https://pdbe.org/3x0u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3x0u RCSB], [https://www.ebi.ac.uk/pdbsum/3x0u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3x0u ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> |
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3x0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3x0u OCA], [https://pdbe.org/3x0u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3x0u RCSB], [https://www.ebi.ac.uk/pdbsum/3x0u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3x0u ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Acute hepatopancreatic necrosis disease (AHPND) is a severe, newly emergent penaeid shrimp disease caused by Vibrio parahaemolyticus that has already led to tremendous losses in the cultured shrimp industry. Until now, its disease-causing mechanism has remained unclear. Here we show that an AHPND-causing strain of V. parahaemolyticus contains a 70-kbp plasmid (pVA1) with a postsegregational killing system, and that the ability to cause disease is abolished by the natural absence or experimental deletion of the plasmid-encoded homologs of the Photorhabdus insect-related (Pir) toxins PirA and PirB. We determined the crystal structure of the V. parahaemolyticus PirA and PirB (PirAvp and PirBvp) proteins and found that the overall structural topology of PirAvp/PirBvp is very similar to that of the Bacillus Cry insecticidal toxin-like proteins, despite the low sequence identity (<10%). This structural similarity suggests that the putative PirABvp heterodimer might emulate the functional domains of the Cry protein, and in particular its pore-forming activity. The gene organization of pVA1 further suggested that pirABvp may be lost or acquired by horizontal gene transfer via transposition or homologous recombination. | ||
+ | |||
+ | The opportunistic marine pathogen Vibrio parahaemolyticus becomes virulent by acquiring a plasmid that expresses a deadly toxin.,Lee CT, Chen IT, Yang YT, Ko TP, Huang YT, Huang JY, Huang MF, Lin SJ, Chen CY, Lin SS, Lightner DV, Wang HC, Wang AH, Wang HC, Hor LI, Lo CF Proc Natl Acad Sci U S A. 2015 Aug 10. pii: 201503129. PMID:26261348<ref>PMID:26261348</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 3x0u" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
+ | [[Category: Vibrio parahaemolyticus M0605]] | ||
[[Category: Ko TP]] | [[Category: Ko TP]] | ||
[[Category: Lo CF]] | [[Category: Lo CF]] | ||
[[Category: Wang AHJ]] | [[Category: Wang AHJ]] | ||
[[Category: Wang HC]] | [[Category: Wang HC]] |
Current revision
Crystal structure of PirB
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