7w18
From Proteopedia
(Difference between revisions)
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==Complex structure of alginate lyase PyAly with M5== | ==Complex structure of alginate lyase PyAly with M5== | ||
| - | <StructureSection load='7w18' size='340' side='right'caption='[[7w18]]' scene=''> | + | <StructureSection load='7w18' size='340' side='right'caption='[[7w18]], [[Resolution|resolution]] 1.70Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7W18 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7W18 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7w18]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neopyropia_yezoensis Neopyropia yezoensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7W18 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7W18 FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7w18 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7w18 OCA], [https://pdbe.org/7w18 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7w18 RCSB], [https://www.ebi.ac.uk/pdbsum/7w18 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7w18 ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEM:BETA-D-MANNURONIC+ACID'>BEM</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7w18 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7w18 OCA], [https://pdbe.org/7w18 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7w18 RCSB], [https://www.ebi.ac.uk/pdbsum/7w18 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7w18 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/D2KX85_NEOYE D2KX85_NEOYE] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Alginate lyases can be used to produce well-defined alginate oligosaccharides (AOSs) because of their specificities for AOS products. A large number of alginate lyases have been recorded in the CAZy database; however, the majority are annotated-only alginate lyases that include little information on their products, thus limiting their applications. Here, we establish a simple and experiment-saving approach to predict product distributions for PL7 alginate lyases through extensive structural biology, bioinformatics and biochemical studies. Structural study on several PL7 alginate lyases reveals that two loops around the substrate binding cleft determine product distribution. Furthermore, a database containing the loop information of all annotated-only single-domain PL7 alginate lyases is constructed, enabling systematic exploration of the association between loop and product distribution. Based on these results, a simplified loop/product distribution relationship is proposed, giving us information on product distribution directly from the amino acid sequence. | ||
| + | |||
| + | Determination of oligosaccharide product distributions of PL7 alginate lyases by their structural elements.,Zhang K, Li Z, Zhu Q, Cao H, He X, Zhang XH, Liu W, Lyu Q Commun Biol. 2022 Aug 2;5(1):782. doi: 10.1038/s42003-022-03721-1. PMID:35918517<ref>PMID:35918517</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 7w18" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| + | [[Category: Neopyropia yezoensis]] | ||
[[Category: Liu WZ]] | [[Category: Liu WZ]] | ||
[[Category: Lyu QQ]] | [[Category: Lyu QQ]] | ||
[[Category: Zhang KK]] | [[Category: Zhang KK]] | ||
Current revision
Complex structure of alginate lyase PyAly with M5
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