7etm

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Current revision (05:44, 5 June 2024) (edit) (undo)
 
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<StructureSection load='7etm' size='340' side='right'caption='[[7etm]], [[Resolution|resolution]] 5.90&Aring;' scene=''>
<StructureSection load='7etm' size='340' side='right'caption='[[7etm]], [[Resolution|resolution]] 5.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[7etm]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_cytomegalovirus Human cytomegalovirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ETM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ETM FirstGlance]. <br>
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ETM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ETM FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7etm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7etm OCA], [https://pdbe.org/7etm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7etm RCSB], [https://www.ebi.ac.uk/pdbsum/7etm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7etm ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 5.9&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7etm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7etm OCA], [https://pdbe.org/7etm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7etm RCSB], [https://www.ebi.ac.uk/pdbsum/7etm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7etm ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
 
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[[https://www.uniprot.org/uniprot/Q6RXD3_HCMV Q6RXD3_HCMV]] Forms a portal in the viral capsid through which viral DNA is translocated during DNA packaging. Assembles as a dodecamer at a single fivefold axe of the T=16 icosahedric capsid. Binds to the molecular motor that translocates the viral DNA, termed terminase.[HAMAP-Rule:MF_04012]
 
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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How the human cytomegalovirus (HCMV) genome-the largest among human herpesviruses-is packaged, retained, and ejected remains unclear. We present the in situ structures of the symmetry-mismatched portal and the capsid vertex-specific components (CVSCs) of HCMV. The 5-fold symmetric 10-helix anchor-uncommon among known portals-contacts the portal-encircling DNA, which is presumed to squeeze the portal as the genome packaging proceeds. We surmise that the 10-helix anchor dampens this action to delay the portal reaching a "head-full" packaging state, thus facilitating the large genome to be packaged. The 6-fold symmetric turret, latched via a coiled coil to a helix from a major capsid protein, supports the portal to retain the packaged genome. CVSCs at the penton vertices-presumed to increase inner capsid pressure-display a low stoichiometry, which would aid genome retention. We also demonstrate that the portal and capsid undergo conformational changes to facilitate genome ejection after viral cell entry.
 
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Structural basis for genome packaging, retention, and ejection in human cytomegalovirus.,Li Z, Pang J, Dong L, Yu X Nat Commun. 2021 Jul 27;12(1):4538. doi: 10.1038/s41467-021-24820-3. PMID:34315863<ref>PMID:34315863</ref>
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==See Also==
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*[[Portal protein 3D structures|Portal protein 3D structures]]
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 7etm" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Human cytomegalovirus]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Li, Z]]
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[[Category: Li Z]]
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[[Category: Yu, X]]
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[[Category: Yu X]]
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[[Category: C6 portal vertex]]
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[[Category: Enveloped capsid]]
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[[Category: Viral protein]]
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Current revision

C6 portal vertex in the enveloped virion capsid

PDB ID 7etm

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