8rry

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Current revision (05:02, 12 June 2024) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 8rry is ON HOLD until Paper Publication
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==Crystal structure of copper-loaded SmAA10==
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<StructureSection load='8rry' size='340' side='right'caption='[[8rry]], [[Resolution|resolution]] 1.46&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[8rry]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Serratia_marcescens Serratia marcescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8RRY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8RRY FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4556133&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8rry FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8rry OCA], [https://pdbe.org/8rry PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8rry RCSB], [https://www.ebi.ac.uk/pdbsum/8rry PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8rry ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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In this paper, we employed a multidisciplinary approach, combining experimental techniques and density functional theory (DFT) calculations to elucidate key features of the copper coordination environment of the bacterial lytic polysaccharide monooxygenase (LPMO) from Serratia marcescens (SmAA10). The structure of the holo-enzyme was successfully obtained by X-ray crystallography. We then determined the copper(II) binding affinity using competing ligands and observed that the affinity of the histidine brace ligands for copper is significantly higher than previously described. UV-vis, advanced electron paramagnetic resonance (EPR), and X-ray absorption spectroscopy (XAS) techniques, including high-energy resolution fluorescence detected (HERFD) XAS, were further used to gain insight into the copper environment in both the Cu(II) and Cu(I) redox states. The experimental data were successfully rationalized by DFT models, offering valuable information on the electronic structure and coordination geometry of the copper center. Finally, the Cu(II)/Cu(I) redox potential was determined using two different methods at ca. 350 mV vs NHE and rationalized by DFT calculations. This integrated approach not only advances our knowledge of the active site properties of SmAA10 but also establishes a robust framework for future studies of similar enzymatic systems.
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Authors: Munzone, A., Pujol, M., Reglier, M., Royant, A., Simaan, A.J., Decroos, C.
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Integrated Experimental and Theoretical Investigation of Copper Active Site Properties of a Lytic Polysaccharide Monooxygenase from Serratia marcescens.,Munzone A, Pujol M, Tamhankar A, Joseph C, Mazurenko I, Reglier M, Jannuzzi SAV, Royant A, Sicoli G, DeBeer S, Orio M, Simaan AJ, Decroos C Inorg Chem. 2024 May 30. doi: 10.1021/acs.inorgchem.4c00602. PMID:38814816<ref>PMID:38814816</ref>
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Description: Crystal structure of copper-loaded SmAA10
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Munzone, A]]
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<div class="pdbe-citations 8rry" style="background-color:#fffaf0;"></div>
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[[Category: Pujol, M]]
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== References ==
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[[Category: Royant, A]]
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<references/>
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[[Category: Decroos, C]]
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__TOC__
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[[Category: Reglier, M]]
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</StructureSection>
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[[Category: Simaan, A.J]]
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[[Category: Large Structures]]
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[[Category: Serratia marcescens]]
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[[Category: Decroos C]]
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[[Category: Munzone A]]
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[[Category: Pujol M]]
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[[Category: Reglier M]]
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[[Category: Royant A]]
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[[Category: Simaan AJ]]

Current revision

Crystal structure of copper-loaded SmAA10

PDB ID 8rry

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