8uan

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:23, 17 July 2024) (edit) (undo)
 
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 8uan is ON HOLD until Paper Publication
+
==The crystal structure of cobalt-bound human ADO C18S C239S variant at 1.99 Angstrom==
 +
<StructureSection load='8uan' size='340' side='right'caption='[[8uan]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[8uan]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8UAN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8UAN FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8uan FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8uan OCA], [https://pdbe.org/8uan PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8uan RCSB], [https://www.ebi.ac.uk/pdbsum/8uan PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8uan ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AEDO_HUMAN AEDO_HUMAN]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
We investigated the metal-substituted catalytic activity of human cysteamine dioxygenase (ADO), an enzyme pivotal in regulating thiol metabolism and contributing to oxygen homeostasis. Our findings demonstrate the catalytic competence of cobalt(II)- and nickel(II)-substituted ADO in cysteamine oxygenation. Notably, Co(II)-ADO exhibited superiority over Ni(II)-ADO despite remaining significantly less active than the natural enzyme. Structural analyses through X-ray crystallography and cobalt K-edge excitation confirmed successful metal substitution with minimal structural perturbations. This provided a robust structural basis, supporting a conserved catalytic mechanism tailored to distinct metal centers. This finding challenges the proposed high-valent ferryl-based mechanism for thiol dioxygenases, suggesting a non-high-valent catalytic pathway in the native enzyme. Further investigation of the cysteamine-bound or a peptide mimic of N-terminus RGS5 bound Co(II)-ADO binary complex revealed the metal center's high-spin (S = 3/2) state. Upon reaction with O(2), a kinetically and spectroscopically detectable intermediate emerged with a ground spin state of S = 1/2. This intermediate exhibits a characteristic (59)Co hyperfine splitting (A = 67 MHz) structure in the EPR spectrum alongside UV-vis features, consistent with known low-spin Co(III)-superoxo complexes. This observation, unique for protein-bound thiolate-ligated cobalt centers in a protein, unveils the capacities for O(2) activation in such metal environments. These findings provide valuable insights into the non-heme iron-dependent thiol dioxygenase mechanistic landscape, furthering our understanding of thiol metabolism regulation. The exploration of metal-substituted ADO sheds light on the intricate interplay between metal and catalytic activity in this essential enzyme.
-
Authors: Liu, A., Li, J., Duan, R., Shin, I.
+
Cobalt(II)-Substituted Cysteamine Dioxygenase Oxygenation Proceeds through a Cobalt(III)-Superoxo Complex.,Li J, Duan R, Liu A J Am Chem Soc. 2024 Jul 10;146(27):18292-18297. doi: 10.1021/jacs.4c01871. Epub , 2024 Jun 28. PMID:38941563<ref>PMID:38941563</ref>
-
Description: The crystal structure of cobalt-bound human ADO C18S C239S variant at 1.99 Angstrom
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Liu, A]]
+
<div class="pdbe-citations 8uan" style="background-color:#fffaf0;"></div>
-
[[Category: Shin, I]]
+
== References ==
-
[[Category: Li, J]]
+
<references/>
-
[[Category: Duan, R]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Duan R]]
 +
[[Category: Li J]]
 +
[[Category: Liu A]]
 +
[[Category: Shin I]]

Current revision

The crystal structure of cobalt-bound human ADO C18S C239S variant at 1.99 Angstrom

PDB ID 8uan

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools