7oqh
From Proteopedia
(Difference between revisions)
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<StructureSection load='7oqh' size='340' side='right'caption='[[7oqh]], [[Resolution|resolution]] 3.32Å' scene=''> | <StructureSection load='7oqh' size='340' side='right'caption='[[7oqh]], [[Resolution|resolution]] 3.32Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'> | + | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7OQH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7OQH FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.32Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7oqh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7oqh OCA], [https://pdbe.org/7oqh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7oqh RCSB], [https://www.ebi.ac.uk/pdbsum/7oqh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7oqh ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7oqh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7oqh OCA], [https://pdbe.org/7oqh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7oqh RCSB], [https://www.ebi.ac.uk/pdbsum/7oqh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7oqh ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| - | == Function == | ||
| - | [[https://www.uniprot.org/uniprot/RHO_MYCTU RHO_MYCTU]] Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template. Shows poor RNA-dependent ATP hydrolysis and inefficient DNA-RNA unwinding activities, but exhibits robust and fast transcription termination, which suggests that the transcription termination function of M.tuberculosis Rho is not correlated with its helicase/translocase activities and that these functions may not be important for its RNA release process.[HAMAP-Rule:MF_01884]<ref>PMID:20026069</ref> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | The bacterial Rho factor is a ring-shaped motor triggering genome-wide transcription termination and R-loop dissociation. Rho is essential in many species, including in Mycobacterium tuberculosis where rho gene inactivation leads to rapid death. Yet, the M. tuberculosis Rho [MtbRho] factor displays poor NTPase and helicase activities, and resistance to the natural Rho inhibitor bicyclomycin [BCM] that remain unexplained. To address these issues, we solved the cryo-EM structure of MtbRho at 3.3 A resolution. The MtbRho hexamer is poised into a pre-catalytic, open-ring state wherein specific contacts stabilize ATP in intersubunit ATPase pockets, thereby explaining the cofactor preference of MtbRho. We reveal a leucine-to-methionine substitution that creates a steric bulk in BCM binding cavities near the positions of ATP gamma-phosphates, and confers resistance to BCM at the expense of motor efficiency. Our work contributes to explain the unusual features of MtbRho and provides a framework for future antibiotic development. | ||
| - | + | ==See Also== | |
| - | + | *[[Helicase 3D structures|Helicase 3D structures]] | |
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Mycobacterium tuberculosis]] | ||
[[Category: Boudvillain M]] | [[Category: Boudvillain M]] | ||
[[Category: Bron P]] | [[Category: Bron P]] | ||
Current revision
CryoEM structure of the transcription termination factor Rho from Mycobacterium tuberculosis
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Categories: Large Structures | Boudvillain M | Bron P | Cohen-Gonsaud M | Coste F | Lai Kee Him J | Margeat E | Martin K | Saridakis E | Simon I | Vishwakarma R
