7ouh
From Proteopedia
(Difference between revisions)
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- | ==== | + | ==Structure of the STLV intasome:B56 complex bound to the strand-transfer inhibitor bictegravir== |
- | <StructureSection load='7ouh' size='340' side='right'caption='[[7ouh]]' scene=''> | + | <StructureSection load='7ouh' size='340' side='right'caption='[[7ouh]], [[Resolution|resolution]] 3.50Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7ouh]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Simian_T-lymphotropic_virus_1 Simian T-lymphotropic virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7OUH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7OUH FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ouh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ouh OCA], [https://pdbe.org/7ouh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ouh RCSB], [https://www.ebi.ac.uk/pdbsum/7ouh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ouh ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.5Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=KLQ:Bictegravir'>KLQ</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ouh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ouh OCA], [https://pdbe.org/7ouh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ouh RCSB], [https://www.ebi.ac.uk/pdbsum/7ouh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ouh ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/Q4QY51_9STL1 Q4QY51_9STL1] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Between 10 and 20 million people worldwide are infected with the human T-cell lymphotropic virus type 1 (HTLV-1). Despite causing life-threatening pathologies there is no therapeutic regimen for this deltaretrovirus. Here, we screened a library of integrase strand transfer inhibitor (INSTI) candidates built around several chemical scaffolds to determine their effectiveness in limiting HTLV-1 infection. Naphthyridines with substituents in position 6 emerged as the most potent compounds against HTLV-1, with XZ450 having highest efficacy in vitro. Using single-particle cryo-electron microscopy we visualised XZ450 as well as the clinical HIV-1 INSTIs raltegravir and bictegravir bound to the active site of the deltaretroviral intasome. The structures reveal subtle differences in the coordination environment of the Mg(2+) ion pair involved in the interaction with the INSTIs. Our results elucidate the binding of INSTIs to the HTLV-1 intasome and support their use for pre-exposure prophylaxis and possibly future treatment of HTLV-1 infection. | ||
+ | |||
+ | Structural basis for the inhibition of HTLV-1 integration inferred from cryo-EM deltaretroviral intasome structures.,Barski MS, Vanzo T, Zhao XZ, Smith SJ, Ballandras-Colas A, Cronin NB, Pye VE, Hughes SH, Burke TR Jr, Cherepanov P, Maertens GN Nat Commun. 2021 Aug 17;12(1):4996. doi: 10.1038/s41467-021-25284-1. PMID:34404793<ref>PMID:34404793</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7ouh" style="background-color:#fffaf0;"></div> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Retroviral integrase 3D structures|Retroviral integrase 3D structures]] | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Homo sapiens]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: | + | [[Category: Simian T-lymphotropic virus 1]] |
+ | [[Category: Ballandras-Colas A]] | ||
+ | [[Category: Barski MS]] | ||
+ | [[Category: Cherepanov P]] | ||
+ | [[Category: Cronin NB]] | ||
+ | [[Category: Maertens GN]] | ||
+ | [[Category: Pye VE]] |
Current revision
Structure of the STLV intasome:B56 complex bound to the strand-transfer inhibitor bictegravir
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