9ent

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Current revision (06:09, 31 July 2024) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9ent is ON HOLD until 2026-03-13
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==SSX structure of Autotaxin in cryogenic conditions==
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<StructureSection load='9ent' size='340' side='right'caption='[[9ent]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9ent]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9ENT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9ENT FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5JK:7ALPHA-HYDROXYCHOLESTEROL'>5JK</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9ent FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9ent OCA], [https://pdbe.org/9ent PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9ent RCSB], [https://www.ebi.ac.uk/pdbsum/9ent PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9ent ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/ENPP2_RAT ENPP2_RAT]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The advent of serial crystallography has rejuvenated and popularized room-temperature X-ray crystal structure determination. Structures determined at physiological temperature reveal protein flexibility and dynamics. In addition, challenging samples (e.g. large complexes, membrane proteins and viruses) form fragile crystals that are often difficult to harvest for cryo-crystallography. Moreover, a typical serial crystallography experiment requires a large number of microcrystals, mainly achievable through batch crystallization. Many medically relevant samples are expressed in mammalian cell lines, producing a meager quantity of protein that is incompatible with batch crystallization. This can limit the scope of serial crystallography approaches. Direct in situ data collection from a 96-well crystallization plate enables not only the identification of the best diffracting crystallization condition but also the possibility for structure determination under ambient conditions. Here, we describe an in situ serial crystallography (iSX) approach, facilitating direct measurement from crystallization plates mounted on a rapidly exchangeable universal plate holder deployed at a microfocus beamline, ID23-2, at the European Synchrotron Radiation Facility. We applied our iSX approach on a challenging project, autotaxin, a therapeutic target expressed in a stable human cell line, to determine the structure in the lowest-symmetry P1 space group at 3.0 A resolution. Our in situ data collection strategy provided a complete dataset for structure determination while screening various crystallization conditions. Our data analysis reveals that the iSX approach is highly efficient at a microfocus beamline, improving throughput and demonstrating how crystallization plates can be routinely used as an alternative method of presenting samples for serial crystallography experiments at synchrotrons.
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Authors: Eymery, M.C., McCarthy, A.A., Foos, N., Basu, S.
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In situ serial crystallography facilitates 96-well plate structural analysis at low symmetry.,Foos N, Florial JB, Eymery M, Sinoir J, Felisaz F, Oscarsson M, Beteva A, Bowler MW, Nurizzo D, Papp G, Soler-Lopez M, Nanao M, Basu S, McCarthy AA IUCrJ. 2024 Sep 1. doi: 10.1107/S2052252524005785. PMID:39008358<ref>PMID:39008358</ref>
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Description: SSX structure of Autotaxin in cryogenic conditions
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Eymery, M.C]]
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<div class="pdbe-citations 9ent" style="background-color:#fffaf0;"></div>
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[[Category: Basu, S]]
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== References ==
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[[Category: Foos, N]]
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<references/>
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[[Category: Mccarthy, A.A]]
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Rattus norvegicus]]
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[[Category: Basu S]]
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[[Category: Eymery MC]]
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[[Category: Foos N]]
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[[Category: McCarthy AA]]

Current revision

SSX structure of Autotaxin in cryogenic conditions

PDB ID 9ent

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