8ii8

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Current revision (08:15, 14 August 2024) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 8ii8 is ON HOLD until 2025-08-24
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==X-ray crystal structure of pink-colored protein from Pleurotus salmoneostramineus in complex with natural chromophore==
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<StructureSection load='8ii8' size='340' side='right'caption='[[8ii8]], [[Resolution|resolution]] 1.25&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[8ii8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pleurotus_salmoneostramineus Pleurotus salmoneostramineus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8II8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8II8 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.25&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8ii8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8ii8 OCA], [https://pdbe.org/8ii8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8ii8 RCSB], [https://www.ebi.ac.uk/pdbsum/8ii8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8ii8 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0A2Z5U5S2_9AGAR A0A2Z5U5S2_9AGAR]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The pink-colored protein from the fungus Pleurotus salmoneostramineus (PsPCP) possesses unusual primary sequences with little resemblance to those of known proteins and exhibits a red color in aqueous solution. To understand the pigmentation mechanism of PsPCP, we elucidated the X-ray crystal structure of the native PsPCP. We identified a highly conjugated polyene ligand 2-dehydro-3-deoxylaetiporic acid A as a chromophore ligand, whose solution exhibits yellow. The crystal structure of PsPCP indicated that the ligand is secured in the central cavity and anchored at both termini by hydrophilic interactions and that surrounding residues show CH-pi and C-H...O hydrogen bondings. Geometrical analyses of the bound ligand demonstrated that the conjugated C-C and C horizontal lineC bonds exhibit similar bond distances. The result indicated enhanced electron delocalization within the conjugated CC bond system, resulting in a redshift of the chromophore ligand. The computational estimates of the UV-vis spectra support the view that the electron delocalization within the conjugated CC bonds system of the bound ligand, induced by the specific ligand geometry within a limited space of PsPCP cavity, is responsible for the red pigmentation of PsPCP. Thus, we propose that the coloring mechanism of PsPCP, which constrains the geometry of a highly conjugated polyene ligand, is a novel type of pigment chemistry.
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Authors: Ihara, M., Fukuta, Y., Shirasaka, N.
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Crystal Structure of the Native Chromoprotein from Pleurotus salmoneostramineus Provides Insights into the Pigmentation Mechanism.,Ihara M, Tsuchida N, Sumida M, Himiyama T, Kitayama T, Shirasaka N, Fukuta Y J Agric Food Chem. 2024 Aug 7;72(31):17626-17632. doi: 10.1021/acs.jafc.4c02951. , Epub 2024 Jul 29. PMID:39073883<ref>PMID:39073883</ref>
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Description: X-ray crystal structure of pink-colored protein from Pleurotus salmoneostramineus in complex with natural chromophore
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Fukuta, Y]]
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<div class="pdbe-citations 8ii8" style="background-color:#fffaf0;"></div>
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[[Category: Ihara, M]]
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== References ==
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[[Category: Shirasaka, N]]
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Pleurotus salmoneostramineus]]
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[[Category: Fukuta Y]]
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[[Category: Ihara M]]
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[[Category: Shirasaka N]]

Current revision

X-ray crystal structure of pink-colored protein from Pleurotus salmoneostramineus in complex with natural chromophore

PDB ID 8ii8

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