8dor
From Proteopedia
(Difference between revisions)
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<table><tr><td colspan='2'>[[8dor]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae Klebsiella pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8DOR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8DOR FirstGlance]. <br> | <table><tr><td colspan='2'>[[8dor]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae Klebsiella pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8DOR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8DOR FirstGlance]. <br> | ||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35Å</td></tr> | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35Å</td></tr> | ||
| - | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8dor FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8dor OCA], [https://pdbe.org/8dor PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8dor RCSB], [https://www.ebi.ac.uk/pdbsum/8dor PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8dor ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8dor FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8dor OCA], [https://pdbe.org/8dor PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8dor RCSB], [https://www.ebi.ac.uk/pdbsum/8dor PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8dor ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
[https://www.uniprot.org/uniprot/A6T5Y2_KLEP7 A6T5Y2_KLEP7] | [https://www.uniprot.org/uniprot/A6T5Y2_KLEP7 A6T5Y2_KLEP7] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Klebsiella pneumoniae (Kp) is an infectious disease pathogen that poses a significant global health threat due to its potential to cause severe infections and its tendency to exhibit multidrug resistance. Understanding the enzymatic mechanisms of the oxygen-insensitive nitroreductases (Kp-NRs) from Kp is crucial for the development of effective nitrofuran drugs, such as nitrofurantoin, that can be activated as antibiotics. In this paper, three crystal structures of two Kp-NRs (PDB entries 7tmf/7tmg and 8dor) are presented, and an analysis of their crystal structures and their flavin mononucleotide (FMN)-binding mode is provided. The structures with PDB codes 7tmf (Kp-NR1a), 7tmg (Kp-NR1b) and 8dor (Kp-NR2) were determined at resolutions of 1.97, 1.90 and 1.35 A, respectively. The Kp-NR1a and Kp-NR1b structures adopt an alphabeta fold, in which four-stranded antiparallel beta-sheets are surrounded by five helices. With domain swapping, the beta-sheet was expanded with a beta-strand from the other molecule of the dimer. The difference between the structures lies in the loop spanning Leu173-Ala185: in Kp-NR1a the loop is disordered, whereas the loop adopts multiple conformations in Kp-NR1b. The FMN interactions within Kp-NR1/NR2 involve hydrogen-bond and pi-stacking interactions. Kp-NR2 contains four-stranded antiparallel beta-sheets surrounded by eight helices with two short helices and one beta-sheet. Structural and sequence alignments show that Kp-NR1a/b and Kp-NR2 are homologs of the Escherichia coli oxygen-insensitive NRs YdjA and NfnB and of Enterobacter cloacae NR, respectively. By homology inference from E. coli, Kp-NR1a/b and Kp-NR2 may detoxify polynitroaromatic compounds and Kp-NR2 may activate nitrofuran drugs to cause bactericidal activity through a ping-pong bi-bi mechanism, respectively. | ||
| + | |||
| + | Crystal structures of NAD(P)H nitroreductases from Klebsiella pneumoniae.,Kancherla AD, Liu L, Tillery L, Shek R, Craig JK, Machen AJ, Seibold S, Battaile KP, Fradi S, Barrett LK, Subramanian S, Myler P, Van Voorhis WC, Lovell S Acta Crystallogr F Struct Biol Commun. 2024 Aug 1;80(Pt 8):173-182. doi: , 10.1107/S2053230X24006472. Epub 2024 Jul 11. PMID:38990055<ref>PMID:38990055</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 8dor" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Klebsiella pneumoniae]] | [[Category: Klebsiella pneumoniae]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
Current revision
Crystal structure of Dihydropteridine reductase/oxygen-insensitive NAD(P)H nitroreductase from Klebsiella pneumoniae
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