This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1t6l

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
[[Image:1t6l.jpg|left|200px]]
[[Image:1t6l.jpg|left|200px]]
-
{{Structure
+
<!--
-
|PDB= 1t6l |SIZE=350|CAPTION= <scene name='initialview01'>1t6l</scene>, resolution 1.85&Aring;
+
The line below this paragraph, containing "STRUCTURE_1t6l", creates the "Structure Box" on the page.
-
|SITE=
+
You may change the PDB parameter (which sets the PDB file loaded into the applet)
-
|LIGAND=
+
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-
|ACTIVITY=
+
or leave the SCENE parameter empty for the default display.
-
|GENE= UL44 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10359 Human herpesvirus 5])
+
-->
-
|DOMAIN=
+
{{STRUCTURE_1t6l| PDB=1t6l | SCENE= }}
-
|RELATEDENTRY=
+
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1t6l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t6l OCA], [http://www.ebi.ac.uk/pdbsum/1t6l PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1t6l RCSB]</span>
+
-
}}
+
'''Crystal Structure of the Human Cytomegalovirus DNA Polymerase Subunit, UL44'''
'''Crystal Structure of the Human Cytomegalovirus DNA Polymerase Subunit, UL44'''
Line 30: Line 27:
[[Category: Hogle, J M.]]
[[Category: Hogle, J M.]]
[[Category: Loregian, A.]]
[[Category: Loregian, A.]]
-
[[Category: processivity fold]]
+
[[Category: Processivity fold]]
-
 
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 09:35:48 2008''
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:51:58 2008''
+

Revision as of 06:35, 3 May 2008

Template:STRUCTURE 1t6l

Crystal Structure of the Human Cytomegalovirus DNA Polymerase Subunit, UL44


Overview

The human cytomegalovirus DNA polymerase consists of a catalytic subunit, UL54, and a presumed processivity factor, UL44. We have solved the crystal structure of residues 1-290 of UL44 to 1.85 A resolution by multiwavelength anomalous dispersion. The structure reveals a dimer of UL44 in the shape of a C clamp. Each monomer of UL44 shares its overall fold with other processivity factors, including herpes simplex virus UL42, which is a monomer that binds DNA directly, and the sliding clamp, PCNA, which is a trimer that surrounds DNA, although these proteins share no obvious sequence homology. Analytical ultracentrifugation and gel filtration measurements demonstrated that UL44 also forms a dimer in solution, and substitution of large hydrophobic residues along the homodimer interface with alanine disrupted dimerization and decreased DNA binding. UL44 represents a hybrid processivity factor as it binds DNA directly like UL42, but forms a C clamp that may surround DNA like PCNA.

About this Structure

1T6L is a Single protein structure of sequence from Human herpesvirus 5. Full crystallographic information is available from OCA.

Reference

The cytomegalovirus DNA polymerase subunit UL44 forms a C clamp-shaped dimer., Appleton BA, Loregian A, Filman DJ, Coen DM, Hogle JM, Mol Cell. 2004 Jul 23;15(2):233-44. PMID:15260974 Page seeded by OCA on Sat May 3 09:35:48 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools