Adenosine deaminase 3D structures
From Proteopedia
(Difference between revisions)
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**[[2amx]] – ADA + Co – ''Plasmodium yoeli''<BR /> | **[[2amx]] – ADA + Co – ''Plasmodium yoeli''<BR /> | ||
**[[4gxw]] – ADA + Zn – ''Burkholderia ambifaria'' <BR /> | **[[4gxw]] – ADA + Zn – ''Burkholderia ambifaria'' <BR /> | ||
| + | **[[8fnv]], [[8hrc]] – EcADA – ''Escherichia coli'' – Cryo EM<br /> | ||
*Adenosine deaminase complex with nucleotide | *Adenosine deaminase complex with nucleotide | ||
| Line 53: | Line 54: | ||
**[[1xmk]] – hADA Zα domain <br /> | **[[1xmk]] – hADA Zα domain <br /> | ||
**[[1qgp]] – hADA Zα domain - NMR<br /> | **[[1qgp]] – hADA Zα domain - NMR<br /> | ||
| - | **[[2l54]] – hADA Zα domain (mutant) - NMR<br /> | + | **[[2l54]], [[8gbc]], [[8gbd]] – hADA Zα domain (mutant) - NMR<br /> |
**[[2acj]], [[1qbj]], [[2gxb]], [[3f21]], [[3f22]], [[3f23]], [[3irq]], [[3irr]], [[5zu1]], [[5zuo]], [[5zup]] – hADA Zα domain + DNA<br /> | **[[2acj]], [[1qbj]], [[2gxb]], [[3f21]], [[3f22]], [[3f23]], [[3irq]], [[3irr]], [[5zu1]], [[5zuo]], [[5zup]] – hADA Zα domain + DNA<br /> | ||
| + | **[[7zj1]] – hADA 3rd RNA-binding domain <br /> | ||
**[[2mdr]] – hADA 3rd RNA-binding domain - NMR<br /> | **[[2mdr]] – hADA 3rd RNA-binding domain - NMR<br /> | ||
| + | **[[7zlq]] – hADA 3rd RNA-binding domain + RNA <br /> | ||
**[[1zy7]] – hADA catalytic domain + inositol hexakisphosphate<br /> | **[[1zy7]] – hADA catalytic domain + inositol hexakisphosphate<br /> | ||
**[[6vff]] – hADA catalytic domain + inositol hexakisphosphate + RNA<br /> | **[[6vff]] – hADA catalytic domain + inositol hexakisphosphate + RNA<br /> | ||
| - | **[[6d06]], [[5hp2]], [[5hp3]], [[5ed1]], [[5ed2]], [[7kfn]] – hADA catalytic domain + RNA<br /> | + | **[[6d06]], [[5hp2]], [[5hp3]], [[5ed1]], [[5ed2]], [[7kfn]], [[8e0f]] – hADA catalytic domain + RNA<br /> |
| + | **[[8e4x]] – hADA catalytic domain (mutant) + RNA<br /> | ||
**[[7c0j]] – hADA catalytic domain/histone H5 (mutant) + DNA<br /> | **[[7c0j]] – hADA catalytic domain/histone H5 (mutant) + DNA<br /> | ||
**[[2b7t]], [[2b7v]] – rADA 1st RNA-binding domain – rat<br /> | **[[2b7t]], [[2b7v]] – rADA 1st RNA-binding domain – rat<br /> | ||
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**[[7bv5]] – ADA subunits TAD2, TAD3 + Zn - yeast<br /> | **[[7bv5]] – ADA subunits TAD2, TAD3 + Zn - yeast<br /> | ||
**[[7eey]] – ADA subunit TAD2 N-terminal – fission yeast<br /> | **[[7eey]] – ADA subunit TAD2 N-terminal – fission yeast<br /> | ||
| - | **[[1z3a]] – | + | **[[1z3a], [[8e2r]], [[8e2s]]] – EcADA <br /> |
| + | **[[8e2p]], [[8e2q]] – EcADA + DNA<br /> | ||
**[[6vpc]] – EcADA in SPCAS9 DNA adenine base editor – Cryo EM<br /> | **[[6vpc]] – EcADA in SPCAS9 DNA adenine base editor – Cryo EM<br /> | ||
| - | **[[2b3j]] – ADA + Zn + tRNA stem-loop – '' | + | **[[2b3j]] – ADA + Zn + tRNA stem-loop – ''Staphylococcus aureus''<BR /> |
**[[1wwr]] – ADA – ''Aquifex aeolicus''<br /> | **[[1wwr]] – ADA – ''Aquifex aeolicus''<br /> | ||
**[[2nx8]] – ADA (mutant) + Zn – ''Streptococcus pyogenes''<br /> | **[[2nx8]] – ADA (mutant) + Zn – ''Streptococcus pyogenes''<br /> | ||
Revision as of 10:32, 11 September 2024
3D Structures of Adenosine deaminase
Updated on 11-September-2024 {{#tree:id=OrganizedByTopic|openlevels=0|
- Adenosine deaminase
- Adenosine deaminase complex with nucleotide
- 1krm – bADA + Zn + adenosine analog
- 1add – mADA + Zn + deaza-adenosine
- 3km8 – mADA (mutant) + Zn + deaza-adenosine
- 2ada – mADA + Zn + transition state analog
- 1fkw, 1fkx, 1uio, 1uip – mADA (mutant) + Zn + adenosine analog
- 1a4m – mADA + Zn + adenosine analog
- 2pgf – PvADA + Zn + adenosine – Plasmodium vivax
- 2pgr – PvADA + Zn + adenosine analog
- 2qvn – PvADA + guanosine
- 3pan – PaADA + Zn + hypoxanthine
- 3pao – PaADA + Zn + adenine
- 3rys – ADA + Zn + adenine – Arthrobacter aurescens
- 6ii7 – ADA (mutant) + Zn + hypoxanthine + inosine – Plasmodium falciparum
- 1krm – bADA + Zn + adenosine analog
- Adenosine deaminase complex with inhibitor
- 3lgg – hADA2 + Zn + coformycin
- 1ndv, 1ndw, 1ndy, 1ndz, 1o5r, 1qxl, 1uml, 1v79, 1v7a, 1wxy, 1wxz, 2e1w, 2z7g – bADA + Zn + inhibitor
- 1a4l – mADA + Zn + inhibitor
- 3ewc – PvADA + Zn + inhibitor
- 3ewd – PvADA (mutant) + Zn + inhibitor
- 3pbm – PaADA + Zn + chloropurine
- 6n9m – ADA + Zn + pentostatin – Salmonella typhimurium
- 6n91 – ADA + Zn + pentostatin – Vibrio cholerae
- 3lgg – hADA2 + Zn + coformycin
- Adenosine deaminase complex with protein
- Double-stranded RNA-specific adenosine deaminase; domains – Zα 125-201; Zβ 294-366; 3rd RNA-binding 708-801; catalytic 299-729
- 1xmk – hADA Zα domain
- 1qgp – hADA Zα domain - NMR
- 2l54, 8gbc, 8gbd – hADA Zα domain (mutant) - NMR
- 2acj, 1qbj, 2gxb, 3f21, 3f22, 3f23, 3irq, 3irr, 5zu1, 5zuo, 5zup – hADA Zα domain + DNA
- 7zj1 – hADA 3rd RNA-binding domain
- 2mdr – hADA 3rd RNA-binding domain - NMR
- 7zlq – hADA 3rd RNA-binding domain + RNA
- 1zy7 – hADA catalytic domain + inositol hexakisphosphate
- 6vff – hADA catalytic domain + inositol hexakisphosphate + RNA
- 6d06, 5hp2, 5hp3, 5ed1, 5ed2, 7kfn, 8e0f – hADA catalytic domain + RNA
- 8e4x – hADA catalytic domain (mutant) + RNA
- 7c0j – hADA catalytic domain/histone H5 (mutant) + DNA
- 2b7t, 2b7v – rADA 1st RNA-binding domain – rat
- 2l3c, 2l3j – rADA 1st RNA-binding domain + RNA – NMR
- 2l2k – mADA residues 230-301 + RNA – NMR
- 2ljh – ADA DRBM domain – Drosophila melanogaster – NMR
- 1xmk – hADA Zα domain
- tRNA-specific adenosine deaminase
- 3dh1 – hADA subunit ADAT2
- 7nz7, 7nz8, 7nz9 – mADA subunits ADAT2/ADAT3
- 7bv5 – ADA subunits TAD2, TAD3 + Zn - yeast
- 7eey – ADA subunit TAD2 N-terminal – fission yeast
- [[1z3a], 8e2r, 8e2s] – EcADA
- 8e2p, 8e2q – EcADA + DNA
- 6vpc – EcADA in SPCAS9 DNA adenine base editor – Cryo EM
- 2b3j – ADA + Zn + tRNA stem-loop – Staphylococcus aureus
- 1wwr – ADA – Aquifex aeolicus
- 2nx8 – ADA (mutant) + Zn – Streptococcus pyogenes
- 7cph – ADA + Zn – Bacillus subtilis
- 3dh1 – hADA subunit ADAT2
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