8z55

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:05, 9 October 2024) (edit) (undo)
 
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 8z55 is ON HOLD until Paper Publication
+
==Crystal structure of human SIRT5 in complex with succPrx1 and ADP ribose==
 +
<StructureSection load='8z55' size='340' side='right'caption='[[8z55]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[8z55]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8Z55 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8Z55 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.83&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=SLL:(2S)-2-AZANYL-6-[(4-HYDROXY-4-OXO-BUTANOYL)AMINO]HEXANOIC+ACID'>SLL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8z55 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8z55 OCA], [https://pdbe.org/8z55 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8z55 RCSB], [https://www.ebi.ac.uk/pdbsum/8z55 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8z55 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SIR5_HUMAN SIR5_HUMAN] NAD-dependent lysine demalonylase and desuccinylase that specifically removes malonyl and succinyl groups on target proteins. Activates CPS1 and contributes to the regulation of blood ammonia levels during prolonged fasting: acts by mediating desuccinylation of CPS1, thereby increasing CPS1 activity in response to elevated NAD levels during fasting. Activates SOD1 by mediating its desuccinylation, leading to reduced reactive oxygen species. Has weak NAD-dependent protein deacetylase activity; however this activity may not be physiologically relevant in vivo. Can deacetylate cytochrome c (CYCS) and a number of other proteins in vitro.<ref>PMID:18680753</ref> <ref>PMID:21908771</ref> <ref>PMID:24140062</ref> <ref>PMID:22076378</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
SIRT5, one of the mammalian sirtuins, specifically recognizes succinyl-lysine residues on proteins and catalyzes the desuccinylation reaction. In this study, we characterized SIRT5 mutants with hydrophobic amino acid substitutions at Q140 and N141, in addition to the catalytic residue H158, known as an active site residue, by the Michaelis-Menten analysis and X-ray crystallography. Kinetic analysis showed that the catalytic efficiency (k(cat)/K(m)) of the Q140L and N141V mutants decreased to 0.02 times and 0.0038 times that of the wild-type SIRT5, respectively, with the activity of the N141V mutant becoming comparable to that of the H158M mutant. Our findings indicate that N141 contributes significantly to the desuccinylation reaction.
-
Authors: Yokoyama, T., Takayama, Y.
+
SIRT5 mutants reveal the role of conserved asparagine and glutamine residues in the NAD(+)-binding pocket.,Yokoyama T, Takayama Y, Mizuguchi M, Nabeshima Y, Kusaka K FEBS Lett. 2024 Sep;598(18):2269-2280. doi: 10.1002/1873-3468.14961. Epub 2024 , Jun 20. PMID:39031546<ref>PMID:39031546</ref>
-
Description: Crystal structure of human SIRT5 in complex with succPrx1 and ADP ribose
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Takayama, Y]]
+
<div class="pdbe-citations 8z55" style="background-color:#fffaf0;"></div>
-
[[Category: Yokoyama, T]]
+
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Takayama Y]]
 +
[[Category: Yokoyama T]]

Current revision

Crystal structure of human SIRT5 in complex with succPrx1 and ADP ribose

PDB ID 8z55

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/8z55"
Personal tools