3k0b

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Current revision (05:55, 17 October 2024) (edit) (undo)
 
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==Crystal structure of a predicted N6-adenine-specific DNA methylase from Listeria monocytogenes str. 4b F2365==
==Crystal structure of a predicted N6-adenine-specific DNA methylase from Listeria monocytogenes str. 4b F2365==
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<StructureSection load='3k0b' size='340' side='right' caption='[[3k0b]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
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<StructureSection load='3k0b' size='340' side='right'caption='[[3k0b]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3k0b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lismf Lismf]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K0B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3K0B FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3k0b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Listeria_monocytogenes_serotype_4b_str._F2365 Listeria monocytogenes serotype 4b str. F2365]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K0B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3K0B FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">LMOf2365_1916 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=265669 LISMF])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3k0b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k0b OCA], [https://pdbe.org/3k0b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3k0b RCSB], [https://www.ebi.ac.uk/pdbsum/3k0b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3k0b ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3k0b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k0b OCA], [http://pdbe.org/3k0b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3k0b RCSB], [http://www.ebi.ac.uk/pdbsum/3k0b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3k0b ProSAT]</span></td></tr>
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</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
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<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k0/3k0b_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k0/3k0b_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Lismf]]
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[[Category: Large Structures]]
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[[Category: Cui, H]]
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[[Category: Listeria monocytogenes serotype 4b str. F2365]]
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[[Category: Edwards, A]]
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[[Category: Cui H]]
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[[Category: Joachimiak, A]]
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[[Category: Edwards A]]
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[[Category: Structural genomic]]
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[[Category: Joachimiak A]]
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[[Category: Nocek, B]]
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[[Category: Nocek B]]
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[[Category: Savchenko, A]]
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[[Category: Savchenko A]]
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[[Category: Xu, X]]
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[[Category: Xu X]]
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[[Category: Mcsg]]
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[[Category: Methylase]]
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[[Category: Methyltransferase]]
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[[Category: Pf01170]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: Putative rna methylase]]
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[[Category: Transferase]]
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[[Category: Unknown function]]
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Current revision

Crystal structure of a predicted N6-adenine-specific DNA methylase from Listeria monocytogenes str. 4b F2365

PDB ID 3k0b

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